@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA2554: (2016-02-08 )
MRIENRVFLVTGGSSGLGAATAKMLVEQGGKVVLADINAEAGAAKAAELGAQARFVRADIASEADGRQAVAAALEAFGGLHGLANCAGVAPAEKVLGRNGIHALESFRRVIDINLVGSFNMLRLAAEAMSQGQPDEGGERGVIVNTASVAAFDGQIGQAAYSASKSGVVGMTLPIARELARFGIRVMTIAPGIFETPMMAGMPQEVRDSLGASVPFPPRLGRPDEYAALVRQIIENSMLNGEVIRLDGAIRMAAR

Atome Classification :

(36 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_A_3(2O23)
HCD2_HUMAN
[Raw transfer]



NAD_D_8(1E3W)
HCD2_RAT
[Raw transfer]



NAD_C_7(1E3W)
HCD2_RAT
[Raw transfer]



NAD_F_6(1U7T)
HCD2_HUMAN
[Raw transfer]



TDT_H_8(1U7T)
HCD2_HUMAN
[Raw transfer]



TDT_E_5(1U7T)
HCD2_HUMAN
[Raw transfer]



NAD_D_8(1E6W)
HCD2_RAT
[Raw transfer]



NAD_C_7(1E6W)
HCD2_RAT
[Raw transfer]



TDT_G_7(1U7T)
HCD2_HUMAN
[Raw transfer]



NAD_B_6(1E3W)
HCD2_RAT
[Raw transfer]



NAD_B_6(1E6W)
HCD2_RAT
[Raw transfer]



NAD_A_5(1E6W)
HCD2_RAT
[Raw transfer]



NAD_A_5(1E3W)
HCD2_RAT
[Raw transfer]



NAD_C_7(1E3S)
HCD2_RAT
[Raw transfer]



NAD_D_8(1E3S)
HCD2_RAT
[Raw transfer]



NAD_A_5(1E3S)
HCD2_RAT
[Raw transfer]



NAD_B_6(1E3S)
HCD2_RAT
[Raw transfer]



ADN_A_3(1UAY)
?
[Raw transfer]



ADN_B_4(1UAY)
?
[Raw transfer]



EST_L_9(1E6W)
HCD2_RAT
[Raw transfer]
21 PsiBlast_CBE 92.3075% -96 - C1 -4O5O - ? -
23 PsiBlast_CBE 91.3975% -96 - C1 -4PN3 - ? -
32 PsiBlast_CBE 90.9867%-100 - C1 -4XGN - ? -
27 PsiBlast_CBE 90.9175% -96 - C1 -4PN3 - ? -
25 PsiBlast_CBE 90.9075% -97 - C1 -4PN3 - ? -
28 PsiBlast_CBE 90.7875% -96 - C1 -4PN3 - ? -
1 PsiBlast_PDB 90.3175% -97 - C1 -4O5O - ? -
31 PsiBlast_CBE 90.2567%-100 - C1 -4XGN - ? -
34 PsiBlast_CBE 90.1267% -97 - C1 -4XGN - ? -
29 PsiBlast_CBE 90.1167% -98 - C1 -4XGN - ? -
4 PsiBlast_PDB 90.0967% -98 - C1 -4XGN - ? -
35 PsiBlast_CBE 89.6467% -97 - C1 -4XGN - ? -
2 PsiBlast_PDB 89.5275% -97 - C1 -4PN3 - ? -
33 PsiBlast_CBE 89.0267% -99 - C1 -4XGN - ? -
24 PsiBlast_CBE 88.5075% -95 - C1 -4PN3 - ? -
22 PsiBlast_CBE 86.2875% -96 - C1 -4PN3 - ? -
26 PsiBlast_CBE 85.7475% -97 - C1 -4PN3 - ? -
45 PsiBlast_CBE 82.7855% -98 - C1 -1E6W 11.7 HCD2_RAT
6 PsiBlast_PDB 82.7857% -94 - C1 -1U7T 14.5 HCD2_HUMAN
38 PsiBlast_CBE 82.0857% -97 - C1 -1U7T 14.5 HCD2_HUMAN
37 PsiBlast_CBE 81.9757% -94 - C1 -1U7T 15.5 HCD2_HUMAN
40 PsiBlast_CBE 81.2255% -97 - C1 -1E3W 12.0 HCD2_RAT
39 PsiBlast_CBE 81.1357% -94 - C1 -1U7T 10.4 HCD2_HUMAN
48 PsiBlast_CBE 81.0055% -99 - C1 -1E3W 11.2 HCD2_RAT
46 PsiBlast_CBE 80.8155%-100 - C1 -1E6W 11.9 HCD2_RAT
9 PsiBlast_PDB 80.1955%-100 - C1 -1E3W 10.7 HCD2_RAT
47 PsiBlast_CBE 79.6355%-101 - C1 -1E6W 11.3 HCD2_RAT
12 PsiBlast_PDB 79.2458% -94 - C1 -1UAY 6.1 ?
10 PsiBlast_PDB 78.8655% -97 - C1 -1E6W 11.7 HCD2_RAT
11 PsiBlast_PDB 78.7757% -95 - C1 -2O23 10.5 HCD2_HUMAN
41 PsiBlast_CBE 78.6255% -97 - C1 -1E3W 11.7 HCD2_RAT
44 PsiBlast_CBE 77.6155% -98 - C1 -1E3S 10.9 HCD2_RAT
8 PsiBlast_PDB 77.2655% -98 - C1 -1E3S 10.3 HCD2_RAT
43 PsiBlast_CBE 77.0855% -98 - C1 -1E3S 10.6 HCD2_RAT
49 PsiBlast_CBE 76.2858% -94 - C1 -1UAY 6.4 ?
42 PsiBlast_CBE 76.2855% -98 - C1 -1E3S 10.9 HCD2_RAT