@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA2623: (2016-02-09 )
MGYQKIQVPATGDKITVNADMSLSVPKNPIIPFIEGDGIGVDISPVMIKVVDAAVEKAYKGERKIAWMEVYAGEKATQVYDQDTWLPQETLDAVRDYVVSIKGPLTTPVGGGIRSLNVALRQQLDLYVCQRPVRWFEGVPSPVKKPGDVDMVIFRENSEDIYAGVEWKAGSPEAEKVIKFLTEEMGVKKIRFTENCGIGIKPVSQEGTKRLVRKALQYAVDNDRSSVTLVHKGNIMKFTEGAFKDWGYEVARDEFGAELLDGGPWMQFKNPKTGKNVVVKDVIADAMLQQILLRPAEYDVIATLNLNGDYLSDALAAEVGGIGIAPGANLSDSVAMFEATHGTAPKYAGQDKVNPGSLILSAEMMLRHMGWTEAADLIIKGTNGAIAAKTVTYDFERLMDGATLLSCSEFGDAMIAKM

Atome Classification :

(36 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ICT_A_3(4AJA)
IDH_ECOLI
[Raw transfer]




ICT_E_5(1PB1)
IDH_ECOLI
[Raw transfer]




ICT_A_3(5ICD)
IDH_ECOLI
[Raw transfer]




ICT_A_3(8ICD)
IDH_ECOLI
[Raw transfer]




ICT_A_3(1GRP)
IDH_ECOLI
[Raw transfer]




ICT_A_3(1GRO)
IDH_ECOLI
[Raw transfer]




ICT_A_4(1CW7)
IDH_ECOLI
[Raw transfer]




ICT_A_4(1P8F)
IDH_ECOLI
[Raw transfer]




ICT_A_2(4BNP)
IDH_ECOLI
[Raw transfer]




ICT_A_4(1CW1)
IDH_ECOLI
[Raw transfer]




ICA_A_3(1AI2)
IDH_ECOLI
[Raw transfer]




CIT_A_3(1HQS)
IDH_BACSU
[Raw transfer]




AKG_A_4(1CW4)
IDH_ECOLI
[Raw transfer]




AKG_A_3(1BL5)
IDH_ECOLI
[Raw transfer]




AKG_A_4(4AJR)
IDH_ECOLI
[Raw transfer]




CIT_F_6(2D1C)
IDH_THET8
[Raw transfer]




IPM_A_4(1HJ6)
IDH_ECOLI
[Raw transfer]




NAP_A_3(4AJR)
IDH_ECOLI
[Raw transfer]




NAP_A_2(4AJ3)
IDH_ECOLI
[Raw transfer]




NAP_A_2(1AI2)
IDH_ECOLI
[Raw transfer]




NAP_C_3(2D1C)
IDH_THET8
[Raw transfer]




NAP_C_3(2D1C)
IDH_THET8
[Raw transfer]




NAP_C_3(2D1C)
IDH_THET8
[Raw transfer]




NAP_D_4(2D1C)
IDH_THET8
[Raw transfer]




NAP_A_3(2E5M)
?
[Raw transfer]




NAP_A_5(1HJ6)
IDH_ECOLI
[Raw transfer]




TAP_A_2(4AJB)
IDH_ECOLI
[Raw transfer]




NAP_B_7(1XKD)
?
[Raw transfer]




TAP_A_2(4AJA)
IDH_ECOLI
[Raw transfer]




NAP_B_4(2E5M)
?
[Raw transfer]




NAP_A_5(1XKD)
?
[Raw transfer]




GOL_A_6(3TY4)
LYS12_SCHPO
[Raw transfer]




NDO_A_2(1AI3)
IDH_ECOLI
[Raw transfer]




A2P_A_2(4AJS)
IDH_ECOLI
[Raw transfer]




NAP_C_3(9ICD)
IDH_ECOLI
[Raw transfer]




A2P_A_2(4AJC)
IDH_ECOLI
[Raw transfer]




AMP_I_9(1ISO)
IDH_ECOLI
[Raw transfer]




TRS_A_2(2Y3Z)
LEU3_THET8
[Raw transfer]




4 PsiBlast_PDB 98.7778% -98 - C6 -1PB1 4.0 IDH_ECOLI
5 PsiBlast_PDB 98.7178% -98 - C6 -1PB3 - IDH_ECOLI -
24 PsiBlast_CBE 98.4878% -97 - C6 -4AJC 5.1 IDH_ECOLI
11 PsiBlast_PDB 98.3578% -98 - C6 -9ICD 5.2 IDH_ECOLI
14 PsiBlast_PDB 98.3178% -98 - C6 -4AJA 6.8 IDH_ECOLI
19 PsiBlast_PDB 98.3078% -97 - C6 -1CW7 3.2 IDH_ECOLI
3 PsiBlast_PDB 98.0778% -98 - C6 -1P8F 3.3 IDH_ECOLI
12 PsiBlast_PDB 97.9978%-100 - C6 -3LCB - IDH_ECOLI -
27 PsiBlast_CBE 97.9878% -98 - C6 -1CW1 4.1 IDH_ECOLI
25 PsiBlast_CBE 97.9678% -97 - C6 -4AJB 6.8 IDH_ECOLI
26 PsiBlast_CBE 97.9478% -97 - C6 -1CW4 3.1 IDH_ECOLI
17 PsiBlast_PDB 97.9278% -98 - C6 -7ICD - IDH_ECOLI -
6 PsiBlast_PDB 97.9278% -95 - C6 -1AI2 7.0 IDH_ECOLI
8 PsiBlast_PDB 97.8678%-100 - C6 -1SJS - IDH_ECOLI -
28 PsiBlast_CBE 97.8378% -97 - C6 -1GRP 3.2 IDH_ECOLI
23 PsiBlast_CBE 97.8378% -98 - C6 -4AJR 9.0 IDH_ECOLI
16 PsiBlast_PDB 97.8378% -94 - C6 -1HJ6 8.6 IDH_ECOLI
20 PsiBlast_PDB 97.7978% -96 - C6 -6ICD - IDH_ECOLI -
13 PsiBlast_PDB 97.7778% -96 - C6 -4AJ3 9.0 IDH_ECOLI
10 PsiBlast_PDB 97.7478% -98 - C6 -5ICD 3.5 IDH_ECOLI
22 PsiBlast_CBE 97.7278% -96 - C6 -4AJS 5.6 IDH_ECOLI
21 PsiBlast_CBE 97.7178% -95 - C6 -4BNP 4.1 IDH_ECOLI
29 PsiBlast_CBE 97.6578% -97 - C6 -1GRO 3.0 IDH_ECOLI
1 PsiBlast_PDB 97.3978% -94 - C6 -1BL5 3.7 IDH_ECOLI
7 PsiBlast_PDB 97.2878% -93 - C6 -1AI3 6.3 IDH_ECOLI
18 PsiBlast_PDB 96.7578% -96 - C6 -8ICD 3.6 IDH_ECOLI
30 PsiBlast_CBE 96.4877% -95 - C6 -1ISO 3.7 IDH_ECOLI
67 HHSearch 88.5966% -88 - C6 -1HQS 3.9 IDH_BACSU
40 PsiBlast_CBE 78.2047% -86 - C6 -1XKD 8.0 ?
39 PsiBlast_CBE 77.0947% -85 - C6 -1XKD 6.9 ?
38 PsiBlast_CBE 77.0148% -86 - C6 -2E5M 7.1 ?
37 PsiBlast_CBE 76.5448% -86 - C6 -2E5M 7.1 ?
53 Fugue 66.3538% -73 - C6 -2D1C 8.4 IDH_THET8
68 HHSearch 62.9238% -83 - C6 -2D1C 8.4 IDH_THET8
42 PsiBlast_CBE 57.4536% -81 - C6 -2D1C 8.6 IDH_THET8
43 PsiBlast_CBE 57.1636% -83 - C6 -2D1C 8.3 IDH_THET8