@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA2744: (2016-02-10 )
MPIITLPDGSQRSFDHPVSVAEVAQSIGAGLAKATLAGKVDGRLVDACDTIDRDATLQIITPKDEEGLEIIRHSCAHLVGHAVKQLYPTAKMVIGPVIEEGFYYDIFFERPFTPEDMAAIQQRMRELIDKDYDVIKKMTPRAEVIELFKSRGEDYKLRLIDDMPDEKAMGLYFHEEYVDMCRGPHVPNTRFLKAFQLTKISGAYWRGDSKNEQLQRIYGTAWADKKQLAAYIQRIEEAEKRDHRRIGKQLDLFHLQEEAPGMVFWHPNGWSVYQVLEQYMRKVQRDHGYVEVRTPQVVDRILWERSGHWSNYAENMFTTSSESRDYAVKPMNCPCHVQIFNQGLKSYRDLPLRLAEFGACHRNEPSGALHGIMRVRGFTQDDAHIFCTEEQVKKEAADFIKLTLQVYRDFGFTDIAMKLSTRPAKRVGSDELWDRAEGALADALNESGLAWEYQPGEGAFYGPKIEFTLKDCLGRNWQCGTLQYDPNLPERLDASYIAEDNNRKRPVMLHRAILGSFERFIGMLIEHYAGAFPAWLAPTQAVVMNITDKQADFAAEVVRILGESGFRAKSDLRNEKIGFKIREHTLLKVPYLLVIGDREVESKAVAVRTREGEDLGSMPVTQFAELLAQAVSRRGRQDSE

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

409_A_4(4HWO)
SYT_ECOLI
[Raw transfer]



409_B_6(4HWO)
SYT_ECOLI
[Raw transfer]



TSB_A_3(3UH0)
SYTM_YEAST
[Raw transfer]



TSB_A_3(3UH0)
SYTM_YEAST
[Raw transfer]



SSA_B_6(1FYF)
SYT_ECOLI
[Raw transfer]



1B2_B_6(4HWR)
SYT_ECOLI
[Raw transfer]



SSA_A_5(1FYF)
SYT_ECOLI
[Raw transfer]



1B2_A_4(4HWR)
SYT_ECOLI
[Raw transfer]



X16_A_4(4HWP)
SYT_ECOLI
[Raw transfer]



X16_B_6(4HWP)
SYT_ECOLI
[Raw transfer]



1B3_A_4(4HWS)
SYT_ECOLI
[Raw transfer]



1B3_B_6(4HWS)
SYT_ECOLI
[Raw transfer]



1B2_B_6(4HWT)
SYTC_HUMAN
[Raw transfer]



1B2_A_4(4HWT)
SYTC_HUMAN
[Raw transfer]



THR_B_5(1EVK)
SYT_ECOLI
[Raw transfer]



2CR_B_9(4P3O)
SYT_ECOLI
[Raw transfer]



2CR_A_4(4P3P)
SYT_ECOLI
[Raw transfer]



2CR_A_4(4P3O)
SYT_ECOLI
[Raw transfer]



2CR_B_8(4P3P)
SYT_ECOLI
[Raw transfer]
1 PsiBlast_PDB 90.3865%-100 - C1 -1QF6 - SYT_ECOLI -
53 HHSearch 90.2765%-100 - C2 -1QF6 - SYT_ECOLI -
54 HHSearch 79.6341% -97 - C2 -1NYR - SYT_STAAW -
12 PsiBlast_PDB 77.7041% -96 - C2 -1NYQ - SYT_STAAW -
13 PsiBlast_PDB 77.5641% -97 - C2 -1NYR - SYT_STAAW -
40 PsiBlast_CBE 74.5941% -93 * C2 *1NYQ - SYT_STAAW -
39 PsiBlast_CBE 73.3141% -92 - C2 -1NYR - SYT_STAAW -
35 PsiBlast_CBE 70.4466% -94 - C1 -4HWP 8.4 SYT_ECOLI
56 HHSearch 69.7766% -94 - C1 -1EVL - SYT_ECOLI -
36 PsiBlast_CBE 69.5066% -94 - C1 -4HWO 8.7 SYT_ECOLI
37 PsiBlast_CBE 69.2066% -94 - C1 -4P3P 9.0 SYT_ECOLI
33 PsiBlast_CBE 69.0866% -94 - C1 -4HWS 9.7 SYT_ECOLI
4 PsiBlast_PDB 69.0865% -91 - C1 -1FYF 8.5 SYT_ECOLI
3 PsiBlast_PDB 68.8665% -90 - C1 -1EVL - SYT_ECOLI -
8 PsiBlast_PDB 68.8366% -96 - C1 -4HWR 6.8 SYT_ECOLI
6 PsiBlast_PDB 68.7366% -95 - C1 -4HWO 8.8 SYT_ECOLI
11 PsiBlast_PDB 68.4766% -92 - C1 -4P3P 9.3 SYT_ECOLI
10 PsiBlast_PDB 68.4766% -92 - C1 -4P3O 8.9 SYT_ECOLI
34 PsiBlast_CBE 68.4366% -94 - C1 -4HWR 7.4 SYT_ECOLI
38 PsiBlast_CBE 68.3466% -92 - C1 -4P3O 8.9 SYT_ECOLI
28 PsiBlast_CBE 68.1565% -92 - C1 -1FYF 8.6 SYT_ECOLI
32 PsiBlast_CBE 68.1265% -89 - C1 -1EVK 3.2 SYT_ECOLI
7 PsiBlast_PDB 67.6166% -94 - C1 -4HWP 8.2 SYT_ECOLI
9 PsiBlast_PDB 67.5566% -96 - C1 -4HWS 9.6 SYT_ECOLI
14 PsiBlast_PDB 59.2543% -84 - C1 -4HWT 5.0 SYTC_HUMAN
55 HHSearch 58.5040% -78 * C1 *3UH0 8.5 SYTM_YEAST
41 PsiBlast_CBE 58.3143% -81 - C1 -4HWT 5.1 SYTC_HUMAN
18 PsiBlast_PDB 54.0039% -78 - C1 -3UH0 8.5 SYTM_YEAST