@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA2780: (2016-02-11 )
MLGTRLKAARIRAGYSQKQLGMLVGMDEFSASARMNQYERERHSPNMRTSEQLAMVLQVPMAYLYCPEDELAELILKVSSLTPEFKKELTRFIEQLLAAQGSTSRQPVRTRSEL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_G_7(4JQD)
?
[Raw transfer]

-

NACID_C_3(4JQD)
?
[Raw transfer]

-

NACID_C_3(4JCX)
?
[Raw transfer]

-

NACID_C_3(4JCY)
?
[Raw transfer]

-

NACID_G_7(4JQD)
?
[Raw transfer]

-

NACID_C_3(4JCX)
?
[Raw transfer]

-

NACID_C_3(4JQD)
?
[Raw transfer]

-

NACID_C_3(4JCY)
?
[Raw transfer]

-

1 PsiBlast_PDB 99.67100%-114 - C1 -4O8B - ? -
15 PsiBlast_CBE 80.3150%-109 - C1 -4JQD 4.2 ?
4 PsiBlast_PDB 79.5650%-102 - C1 -4JCX 4.0 ?
16 PsiBlast_CBE 79.0950%-107 - C1 -4JQD 5.7 ?
6 PsiBlast_PDB 78.4050%-105 - C1 -4JQD 5.9 ?
5 PsiBlast_PDB 78.1550%-101 - C1 -4JCY 4.7 ?
2 PsiBlast_PDB 77.6250%-101 - C1 -3LFP - ? -
19 PsiBlast_CBE 77.0150% -98 - C1 -4JCX 5.6 ?
18 PsiBlast_CBE 77.0050%-104 - C1 -4JCY 5.9 ?
43 Fugue 76.7150%-101 - C1 -3LFP - ? -
17 PsiBlast_CBE 75.9250%-104 - C1 -4JQD 4.7 ?
3 PsiBlast_PDB 75.1150%-101 - C1 -3LIS - ? -
51 Fugue 57.0021% -72 - C1 -1Y9Q - ? -
45 Fugue 56.9727% -81 - C1 -1Y7Y - ? -
25 HHSearch 56.4723% -92 - C1 -1B0N - SINR_BACSU -
11 PsiBlast_PDB 55.9729% -98 - C1 -1B0N - SINR_BACSU -
20 HHSearch 55.7118% -97 - C1 -3IVP - ? -
12 PsiBlast_PDB 55.1729%-101 - C1 -3ZKC - SINR_BACSU -
7 PsiBlast_PDB 54.4928% -91 - C1 -3VK0 - ? -
40 HHSearch 53.8026%-105 - C1 -1R69 - RPC1_BP434 -