@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA2795: (2016-02-11 )
MRPEPTNAPAALSRRFSVAPMMDWTDRHCRFFLRQLSRHTLLYTEMVTTGALLHGDRQRFLRYDECEHPLALQLGGSVPAELAACARLAEEAGYDEVNLNVGCPSDRVQHNMIGACLMGHPALVADCVKAMLDAVEIAVTVKHRIGINGRDSYAELCDFVGQVREAGCRSFTVHARIAILEGLSPKENREVPPLRYEVAAQLKKDFPDLEIVLNGGIKTLEACREHLQTFDGVMLGREAYHNPYLLAAVDSQLFGSEAPPLSRSEALLRLRPYIERHQAEGGAMHHVTRHILGLAQGFPGSRRFRQLLSVDVHKAADPLRVFDQALELLAGR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FMN_Y_6(3B0U)
DUSAL_THET8
[Raw transfer]




FMN_X_5(3B0U)
DUSAL_THET8
[Raw transfer]




FMN_A_3(3B0P)
DUSAL_THET8
[Raw transfer]




FMN_A_3(3B0P)
DUSAL_THET8
[Raw transfer]




FMN_A_3(3B0P)
DUSAL_THET8
[Raw transfer]




FMN_C_5(3B0V)
DUSAL_THET8
[Raw transfer]




FMN_B_4(3B0P)
DUSAL_THET8
[Raw transfer]




NACID_A_1(3B0U)
DUSAL_THET8
[Raw transfer]

-

NACID_B_2(3B0U)
DUSAL_THET8
[Raw transfer]

-

2 PsiBlast_PDB 98.3547%-122 - C3 -3B0U 8.4 DUSAL_THET8
21 PsiBlast_CBE 98.1947%-122 - C3 -3B0U 9.2 DUSAL_THET8
3 PsiBlast_PDB 97.5646%-117 - C3 -3B0V 8.3 DUSAL_THET8
50 Fugue 96.6147%-125 - C3 -3B0P 9.4 DUSAL_THET8
22 PsiBlast_CBE 96.3547%-127 - C3 -3B0P 9.5 DUSAL_THET8
1 PsiBlast_PDB 95.6147%-128 - C3 -3B0P 9.4 DUSAL_THET8
28 HHSearch 90.9444%-116 - C3 -3B0P 9.4 DUSAL_THET8
27 HHSearch 73.5723%-112 * C3 *1VHN - ? -
52 Fugue 73.5626% -89 - C3 -4BFA - DUSC_ECOLI -
51 Fugue 71.1723% -95 - C3 -1VHN - ? -
4 PsiBlast_PDB 67.3025% -93 - C3 -4BFA - DUSC_ECOLI -
7 PsiBlast_PDB 67.2522% -89 - C3 -1VHN - ? -
5 PsiBlast_PDB 66.9425% -95 - C3 -4YCO - DUSC_ECOLI -
6 PsiBlast_PDB 65.5725% -93 - C3 -4YCP - DUSC_ECOLI -
31 HHSearch 61.4816% -86 - C3 -3KRU - ? -
32 HHSearch 60.7921% -88 - C3 -3HGJ - ? -
8 PsiBlast_PDB 60.6026%-100 - C3 -4BF9 - DUSC_ECOLI -
48 HHSearch 58.1816% -96 - C3 -1GTE - DPYD_PIG -
44 HHSearch 54.6216% -90 - C3 -1JUB - PYRDA_LACLM -
49 HHSearch 54.5118% -89 - C3 -1EP3 - PYRDB_LACLM -