@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA2840: (2016-02-11 )
MGLCGCIRGKPMTQETVGFAALGIHPNVLAAIVAVGYEEPSPIQAQSIPLILEGHDMIGQAQTGTGKTAAFALPLLSRIDPSRREPQMLVLVPTRELALQVATACETYSKQLPGVGVVAVYGGAPMGPQLKALRQGAQILVATPGRLCDHLRRDEKLLATVQRLVLDEADEMLKLGFMDDLEVIFEALPESRQTVLFSATLPASIRGIAERHLKQPKHVKIAAKTQTVARIEQVHLMVHADQKAGSIQRLLEVEQFDALIAFVRTKQATLDYAELLERQGYRAAALNGDMPQAQRERVIESLKDGSLDIVIATDVAARGLDVPRITHVLNIDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTGQKVGEVRLPDAETVLEARLARLAASLTPLLDSAVEQRGAVRDELCRRLGCDAETLAAALLARLTAGKALDLESVRREQPLTPSAPRERADRGERGERPERSGERRPMAPPSEGRARCRTALGARDGVAAKNLLGAILNEGGLSREDIGRIQIRDTFSLIELPEANLERLLTKLKDTRVAGKALRLRRYRED

Atome Classification :

(80 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_7(3FHT)
DD19B_HUMAN
[Raw transfer]




ANP_A_7(3FHT)
DD19B_HUMAN
[Raw transfer]




ANP_A_3(3G0H)
DD19B_HUMAN
[Raw transfer]




ANP_B_12(3FHT)
DD19B_HUMAN
[Raw transfer]




ANP_A_3(3I5X)
MS116_YEAST
[Raw transfer]




ADP_A_4(3FE2)
DDX5_HUMAN
[Raw transfer]




ANP_A_3(3I5X)
MS116_YEAST
[Raw transfer]




ADP_A_3(3PEW)
DBP5_YEAST
[Raw transfer]




ANP_A_3(3I5Y)
MS116_YEAST
[Raw transfer]




ANP_A_3(3B7G)
DDX20_HUMAN
[Raw transfer]




ADP_B_8(3FE2)
DDX5_HUMAN
[Raw transfer]




ANP_B_4(3B7G)
DDX20_HUMAN
[Raw transfer]




ADP_A_3(3PEY)
DBP5_YEAST
[Raw transfer]




ADP_A_3(3PEY)
DBP5_YEAST
[Raw transfer]




ADP_A_4(3RRM)
DBP5_YEAST
[Raw transfer]




ADP_A_3(3I62)
MS116_YEAST
[Raw transfer]




ADP_A_3(3I61)
MS116_YEAST
[Raw transfer]




ADP_B_5(4PX9)
DDX3X_HUMAN
[Raw transfer]




ADP_A_3(2PL3)
DDX10_HUMAN
[Raw transfer]




AMP_A_2(2GXQ)
?
[Raw transfer]




ADP_A_4(4PX9)
DDX3X_HUMAN
[Raw transfer]




ADP_C_6(4PX9)
DDX3X_HUMAN
[Raw transfer]




ADP_A_3(2OXC)
DDX20_HUMAN
[Raw transfer]




ADP_B_4(3FMO)
DD19B_HUMAN
[Raw transfer]




ADP_B_4(2OXC)
DDX20_HUMAN
[Raw transfer]




AMP_B_9(2GXS)
?
[Raw transfer]




ADP_A_2(4PXA)
DDX3X_HUMAN
[Raw transfer]




8OX_B_6(3MWL)
?
[Raw transfer]




AMP_A_2(2I4I)
DDX3X_HUMAN
[Raw transfer]




AMP_A_8(2GXS)
?
[Raw transfer]




AMP_A_2(2I4I)
DDX3X_HUMAN
[Raw transfer]




AMP_B_5(3IUY)
DDX53_HUMAN
[Raw transfer]




ADP_A_3(3RRN)
DBP5_YEAST
[Raw transfer]




AMP_A_3(3IUY)
DDX53_HUMAN
[Raw transfer]




AMP_B_6(2VSO)
IF4A_YEAST
[Raw transfer]




AMP_A_5(2VSO)
IF4A_YEAST
[Raw transfer]




ADP_A_3(3DKP)
DDX52_HUMAN
[Raw transfer]




ADP_A_3(3EWS)
DD19B_HUMAN
[Raw transfer]




AMP_A_5(2VSX)
IF4A_YEAST
[Raw transfer]




8OP_B_6(3MWK)
?
[Raw transfer]




AMP_A_3(3BER)
DDX47_HUMAN
[Raw transfer]




AMP_B_6(2VSX)
IF4A_YEAST
[Raw transfer]




GOL_D_5(4D25)
?
[Raw transfer]




NACID_H_2(2J0Q)
IF4A3_HUMAN
[Raw transfer]

-

NACID_H_4(2DB3)
VASA1_DROME
[Raw transfer]

-

8OD_C_11(3NBF)
?
[Raw transfer]




8OD_A_6(3NBF)
?
[Raw transfer]




8OD_D_13(3NBF)
?
[Raw transfer]




8OD_B_8(3NBF)
?
[Raw transfer]




FLC_C_3(1T6N)
DX39B_HUMAN
[Raw transfer]




FLC_D_4(1T6N)
DX39B_HUMAN
[Raw transfer]




NACID_E_5(4DB2)
MS116_YEAST
[Raw transfer]

-

NACID_J_10(4DB2)
MS116_YEAST
[Raw transfer]

-

NACID_E_1(2J0Q)
IF4A3_HUMAN
[Raw transfer]

-

1PE_A_4(4BRW)
DHH1_YEAST
[Raw transfer]




TLA_B_4(1VEC)
DDX6_HUMAN
[Raw transfer]




NACID_D_2(4D26)
?
[Raw transfer]

-

NACID_E_4(2J0S)
IF4A3_HUMAN
[Raw transfer]

-

NACID_D_2(4D25)
?
[Raw transfer]

-

NACID_L_2(2HYI)
IF4A3_HUMAN
[Raw transfer]

-

NACID_F_9(3EX7)
IF4A3_HUMAN
[Raw transfer]

-

NACID_F_1(2HYI)
IF4A3_HUMAN
[Raw transfer]

-

IPA_D_4(1XTI)
DX39B_HUMAN
[Raw transfer]




NACID_G_3(2DB3)
VASA1_DROME
[Raw transfer]

-

IPA_D_4(1XTI)
DX39B_HUMAN
[Raw transfer]




NACID_F_2(2DB3)
VASA1_DROME
[Raw transfer]

-

NACID_B_2(3SQX)
MS116_YEAST
[Raw transfer]

-

NACID_J_10(3EX7)
IF4A3_HUMAN
[Raw transfer]

-

CHAIN_E_4(2XB2)
IF4A3_HUMAN
[Raw transfer]

-

NACID_E_1(2DB3)
VASA1_DROME
[Raw transfer]

-

NACID_E_1(2DB3)
VASA1_DROME
[Raw transfer]

-

NACID_B_2(3SQW)
MS116_YEAST
[Raw transfer]

-

21 PsiBlast_CBE 88.7746%-104 - C3 -4KBG - ? -
2 PsiBlast_PDB 88.7346%-100 - C3 -4KBF - ? -
22 PsiBlast_CBE 87.8846%-109 - C3 -4KBF - ? -
121 HHSearch 86.4237%-104 - C3 -2I4I 6.0 DDX3X_HUMAN
116 HHSearch 86.1636% -93 - C3 -2DB3 11.3 VASA1_DROME
8 PsiBlast_PDB 85.5934%-100 - C3 -2J0S 11.9 IF4A3_HUMAN
4 PsiBlast_PDB 85.4934%-100 - C3 -2HYI 11.1 IF4A3_HUMAN
1 PsiBlast_PDB 85.2740%-113 - C3 -1HV8 - H669_METJA -
122 HHSearch 85.2040%-108 - C3 -1HV8 - H669_METJA -
24 PsiBlast_CBE 84.2434% -96 - C3 -2HYI 11.2 IF4A3_HUMAN
5 PsiBlast_PDB 84.1634% -98 - C3 -3EX7 12.0 IF4A3_HUMAN
23 PsiBlast_CBE 84.0834% -99 - C3 -3EX7 10.3 IF4A3_HUMAN
9 PsiBlast_PDB 83.9434% -97 - C3 -2XB2 8.6 IF4A3_HUMAN
7 PsiBlast_PDB 83.6934% -97 - C3 -2J0Q 10.2 IF4A3_HUMAN
28 PsiBlast_CBE 83.5535%-108 - C3 -4CT4 - DDX6_HUMAN -
17 PsiBlast_PDB 83.4632%-111 - C3 -1S2M - DHH1_YEAST -
25 PsiBlast_CBE 83.3434% -97 - C3 -2J0Q 9.8 IF4A3_HUMAN
10 PsiBlast_PDB 83.2234%-107 - C3 -2J0U - IF4A3_HUMAN -
11 PsiBlast_PDB 83.1835%-111 - C3 -4CT4 - DDX6_HUMAN -
20 PsiBlast_PDB 83.1337%-105 - C3 -2I4I 5.9 DDX3X_HUMAN
32 PsiBlast_CBE 83.0037% -95 - C3 -4PXA 4.8 DDX3X_HUMAN
36 PsiBlast_CBE 82.9534%-129 - C3 -2VSO 5.1 IF4A_YEAST
35 PsiBlast_CBE 82.8134%-130 - C3 -2VSO 5.0 IF4A_YEAST
34 PsiBlast_CBE 82.4234%-126 - C3 -2VSX 3.2 IF4A_YEAST
33 PsiBlast_CBE 82.3334%-125 - C3 -2VSX 3.5 IF4A_YEAST
43 PsiBlast_CBE 82.3132%-112 - C3 -3EWS 3.8 DD19B_HUMAN
117 HHSearch 82.1033% -97 - C3 -3FHT 7.3 DD19B_HUMAN
19 PsiBlast_PDB 81.6932%-112 - C3 -4BRW 2.0 DHH1_YEAST
29 PsiBlast_CBE 81.5737% -88 - C3 -2DB3 11.0 VASA1_DROME
37 PsiBlast_CBE 81.3733%-106 - C3 -3RRN 3.9 DBP5_YEAST
119 HHSearch 81.3032%-116 - C3 -1XTI 3.7 DX39B_HUMAN
30 PsiBlast_CBE 80.7937% -87 - C3 -2DB3 11.0 VASA1_DROME
46 PsiBlast_CBE 80.7632%-103 - C3 -3FHT 7.3 DD19B_HUMAN
12 PsiBlast_PDB 80.7537% -86 - C3 -2DB3 11.4 VASA1_DROME
13 PsiBlast_PDB 80.5536% -90 - C3 -4D25 12.3 ?
16 PsiBlast_PDB 80.3633%-116 - C3 -1XTI 3.7 DX39B_HUMAN
38 PsiBlast_CBE 80.2633%-105 - C3 -3RRM 5.0 DBP5_YEAST
14 PsiBlast_PDB 80.2636% -90 - C3 -4D26 12.3 ?
31 PsiBlast_CBE 80.2437% -85 - C3 -2DB3 10.6 VASA1_DROME
44 PsiBlast_CBE 79.9832%-102 - C3 -3G0H 7.0 DD19B_HUMAN
45 PsiBlast_CBE 79.7932%-102 - C3 -3FHT 7.5 DD19B_HUMAN
39 PsiBlast_CBE 79.4133% -97 - C3 -3PEW 7.2 DBP5_YEAST
40 PsiBlast_CBE 78.3233%-100 - C3 -3PEY 6.1 DBP5_YEAST
120 HHSearch 78.1430% -99 - C3 -3SQW 10.7 MS116_YEAST
115 HHSearch 78.1130% -98 - C3 -3I5X 7.4 MS116_YEAST
123 HHSearch 77.2233% -92 - C3 -3PEY 6.1 DBP5_YEAST
65 PsiBlast_CBE 74.9131% -90 - C3 -3I61 8.0 MS116_YEAST
64 PsiBlast_CBE 74.7131% -91 - C3 -3I62 7.2 MS116_YEAST
67 PsiBlast_CBE 74.5431% -91 - C3 -3I5X 7.5 MS116_YEAST
66 PsiBlast_CBE 73.9931% -91 - C3 -3I5Y 7.9 MS116_YEAST
68 PsiBlast_CBE 71.2831% -88 - C3 -3SQX 11.4 MS116_YEAST
48 PsiBlast_CBE 69.8450%-110 - C3 -2GXS 4.9 ?
49 PsiBlast_CBE 69.3850%-112 - C3 -2GXS 5.1 ?
55 PsiBlast_CBE 69.1950%-115 - C3 -3MWL 5.0 ?
50 PsiBlast_CBE 68.9150%-112 - C3 -2GXQ 5.8 ?
52 PsiBlast_CBE 68.6950%-113 - C3 -3NBF 5.2 ?
54 PsiBlast_CBE 68.4750%-108 - C3 -3NBF 4.4 ?
51 PsiBlast_CBE 68.2550%-116 - C3 -3NBF 5.3 ?
76 PsiBlast_CBE 68.0937%-120 - C3 -3BER 5.5 DDX47_HUMAN
57 PsiBlast_CBE 67.1350%-112 - C3 -3MWK 3.9 ?
53 PsiBlast_CBE 66.7650%-104 - C3 -3NBF 5.5 ?
69 PsiBlast_CBE 64.8940%-110 - C3 -3FE2 6.3 DDX5_HUMAN
70 PsiBlast_CBE 64.4240%-108 - C3 -3FE2 4.1 DDX5_HUMAN
81 PsiBlast_CBE 63.3939%-108 - C3 -4PX9 5.5 DDX3X_HUMAN
79 PsiBlast_CBE 63.2939%-107 - C3 -4PX9 5.4 DDX3X_HUMAN
80 PsiBlast_CBE 62.6439%-107 - C3 -4PX9 5.5 DDX3X_HUMAN
62 PsiBlast_CBE 62.6040%-109 - C3 -1VEC 2.0 DDX6_HUMAN
71 PsiBlast_CBE 61.9241%-114 - C3 -3IUY 5.9 DDX53_HUMAN
85 PsiBlast_CBE 61.4834%-108 - C3 -3FMO 6.1 DD19B_HUMAN
72 PsiBlast_CBE 60.9841%-111 - C3 -3IUY 5.4 DDX53_HUMAN
77 PsiBlast_CBE 60.8233%-108 - C3 -1T6N 2.9 DX39B_HUMAN
78 PsiBlast_CBE 60.3733%-107 - C3 -1T6N 2.5 DX39B_HUMAN
84 PsiBlast_CBE 60.0435%-108 - C3 -2PL3 6.2 DDX10_HUMAN
86 PsiBlast_CBE 59.8531%-105 - C3 -3B7G 4.7 DDX20_HUMAN
89 PsiBlast_CBE 59.7831%-104 - C3 -2OXC 6.3 DDX20_HUMAN
87 PsiBlast_CBE 59.2631%-106 - C3 -3B7G 4.6 DDX20_HUMAN
88 PsiBlast_CBE 59.1231%-107 - C3 -2OXC 6.8 DDX20_HUMAN
93 PsiBlast_CBE 56.7233%-106 - C3 -3DKP 6.1 DDX52_HUMAN
97 PsiBlast_CBE 19.0237% -5 - C3 -4DB2 3.9 MS116_YEAST
96 PsiBlast_CBE 14.8037% -3 - C3 -4DB2 2.5 MS116_YEAST