@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA2876: (2016-02-11 )
MSACQSPIIVALDFPTREAALALADQLDPKLCRVKVGKELFTSCAAGIVETLRGKGFEVFLDLKFHDIPNTTAMAVKAAAEMGVWMVNVHCSGGLRMMAACRETLEAFSGPRPLLIGVTVLTSMEREDLAGIGLDIEPQEQVLRLAALAQKAGMDGLVCSAQEAPALKAAHPGLQLVTPGIRPAGSAQDDQRRILTPRQALDAGSDYLVIGRPISQAADPAKALAAIVAELG

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BMQ_E_5(1EIX)
PYRF_ECOLI
[Raw transfer]




BMQ_G_7(1EIX)
PYRF_ECOLI
[Raw transfer]




BMQ_E_5(1EIX)
PYRF_ECOLI
[Raw transfer]




BMQ_H_8(1EIX)
PYRF_ECOLI
[Raw transfer]




BMQ_F_6(1EIX)
PYRF_ECOLI
[Raw transfer]




U5P_H_8(1DBT)
PYRF_BACSU
[Raw transfer]




U5P_E_5(1DBT)
PYRF_BACSU
[Raw transfer]




U5P_E_5(1DBT)
PYRF_BACSU
[Raw transfer]




U5P_A_3(3UWQ)
PYRF_VIBCH
[Raw transfer]




U5P_E_5(1DBT)
PYRF_BACSU
[Raw transfer]




U5P_G_7(1DBT)
PYRF_BACSU
[Raw transfer]




U5P_B_9(3UWQ)
PYRF_VIBCH
[Raw transfer]




C5P_A_3(2YYU)
PYRF_GEOKA
[Raw transfer]




U5P_E_5(1DBT)
PYRF_BACSU
[Raw transfer]




C5P_B_4(2YYU)
PYRF_GEOKA
[Raw transfer]




C5P_A_3(2YYU)
PYRF_GEOKA
[Raw transfer]




GOL_A_3(3VE9)
?
[Raw transfer]




GOL_E_5(2CZD)
PYRF_PYRHO
[Raw transfer]




XPE_A_4(3UWQ)
PYRF_VIBCH
[Raw transfer]




EDO_A_9(1VQT)
PYRF_THEMA
[Raw transfer]




PGE_A_7(3UWQ)
PYRF_VIBCH
[Raw transfer]




36 HHSearch 96.7162%-140 - C3 -3LDV - PYRF_VIBCH -
1 PsiBlast_PDB 95.5364%-143 - C3 -3LDV - PYRF_VIBCH -
21 PsiBlast_CBE 95.3864%-146 - C3 -3UWQ 6.2 PYRF_VIBCH
32 HHSearch 94.9458%-127 - C3 -1EIX 6.4 PYRF_ECOLI
23 PsiBlast_CBE 94.8758%-132 - C3 -1EIX 6.1 PYRF_ECOLI
3 PsiBlast_PDB 94.4858%-127 - C3 -1EIX 6.4 PYRF_ECOLI
2 PsiBlast_PDB 94.4864%-148 - C3 -3UWQ 6.0 PYRF_VIBCH
25 PsiBlast_CBE 94.0358%-127 - C3 -1EIX 6.4 PYRF_ECOLI
22 PsiBlast_CBE 93.9564%-146 - C3 -3LDV - PYRF_VIBCH -
24 PsiBlast_CBE 93.9258%-129 - C3 -1EIX 6.4 PYRF_ECOLI
5 PsiBlast_PDB 92.8756%-129 - C3 -1JJK - PYRF_ECOLI -
4 PsiBlast_PDB 92.1758%-139 - C3 -1L2U - PYRF_ECOLI -
53 Fugue 81.5541%-118 - C3 -1DBT 6.9 PYRF_BACSU
8 PsiBlast_PDB 81.4143%-127 - C3 -2YYU 4.2 PYRF_GEOKA
28 PsiBlast_CBE 81.0242%-121 - C3 -1DBT 7.4 PYRF_BACSU
26 PsiBlast_CBE 80.3443%-123 - C3 -2YYU 3.6 PYRF_GEOKA
27 PsiBlast_CBE 80.0242%-119 - C3 -1DBT 7.5 PYRF_BACSU
34 HHSearch 79.8542%-128 - C3 -2YYU 4.2 PYRF_GEOKA
9 PsiBlast_PDB 79.6542%-118 - C3 -1DBT 6.9 PYRF_BACSU
37 HHSearch 78.6432%-129 - C3 -3RU6 - PYRF_CAMJE -
54 Fugue 78.6140%-120 - C3 -1DBT 6.9 PYRF_BACSU
33 HHSearch 76.2338%-113 - C3 -1DBT 7.1 PYRF_BACSU