@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA2889: (2016-02-11 )
MIFTQEHEELRRTVRSFVEREINPNVDQWEKDGRFPIHEIFRKAGELGLLGISKPEKFGGMGLDYSYSIVAAEEFGSITCGGIPMAIGVQTDMCTPALARFGSDELREEFLRPAIAGEMVGCIGVSEVGAGSDVAGLKTTARKDGDDYVINGSKMWITNSPSADFMCLLANTSDDKPHVNKSLIVVPMKTPGITLSPHLDKLGMRSSETAQVFFDNVRVPQRNRIGAEGAGFMMQMLQFQEERLFGAANMIKGLEHCIDVTIEYCKERRTFGQPLIDNQVIHFRMAEMMTEVEALRALVYQATELYVKGRDVTRLASMAKLKAGRLGREVSDACLQYWGGMGFMWDNPVSRAYRDTRLVSIGGGADEIMLGIICKLMGILPGKKKG

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CAA_E_5(1JQI)
ACADS_RAT
[Raw transfer]



CO8_A_5(3MDE)
ACADM_PIG
[Raw transfer]



COS_B_9(4L1F)
?
[Raw transfer]



COS_A_4(4L1F)
?
[Raw transfer]



UCC_B_6(4Y9J)
?
[Raw transfer]



FDA_A_20(3OIB)
?
[Raw transfer]



FAO_A_4(3P4T)
?
[Raw transfer]



FAO_B_5(3P4T)
?
[Raw transfer]



FAO_A_4(3P4T)
?
[Raw transfer]



FAD_I_9(1JQI)
ACADS_RAT
[Raw transfer]



UNL_A_9(3SF6)
?
[Raw transfer]
106 HHSearch 91.8136% -87 - C2 -2PG0 - ? -
78 PsiBlast_CBE 90.2835% -83 - C2 -1UDY - ACADM_PIG -
24 PsiBlast_CBE 90.2835% -83 - C2 -2PG0 - ? -
79 PsiBlast_CBE 90.2135% -85 - C2 -3MDE Error ACADM_PIG
42 PsiBlast_CBE 89.9135% -84 - C2 -1EGC - ACADM_HUMAN -
25 PsiBlast_CBE 89.5735% -81 - C2 -1JQI Error ACADS_RAT
62 PsiBlast_CBE 89.3932% -84 - C2 -4L1F Error ?
81 PsiBlast_CBE 89.3535% -82 - C2 -3MDD - ACADM_PIG -
2 PsiBlast_PDB 89.2735% -84 - C2 -2PG0 - ? -
112 HHSearch 89.1739% -88 - C2 -3R7K - ? -
47 PsiBlast_CBE 89.1532% -88 - C2 -2JIF - ACDSB_HUMAN -
3 PsiBlast_PDB 89.0835% -82 - C2 -1JQI 8.7 ACADS_RAT
38 PsiBlast_CBE 88.9235% -83 - C2 -1EGD - ACADM_HUMAN -
65 PsiBlast_CBE 88.6933% -81 - C2 -3MPJ - ACD_DESML -
52 PsiBlast_CBE 88.6735% -80 - C2 -4P13 - ACADM_HUMAN -
109 HHSearch 88.6434% -85 - C2 -2VIG - ACADS_HUMAN -
50 PsiBlast_CBE 88.5435% -79 - C2 -4P13 - ACADM_HUMAN -
75 PsiBlast_CBE 88.4735% -81 - C2 -1UDY - ACADM_PIG -
76 PsiBlast_CBE 88.3835% -82 - C2 -1UDY - ACADM_PIG -
49 PsiBlast_CBE 88.2632% -88 - C2 -2JIF - ACDSB_HUMAN -
16 PsiBlast_PDB 88.1932% -82 - C2 -4L1F Error ?
119 HHSearch 86.9338% -82 - C2 -3P4T 6.7 ?
26 PsiBlast_CBE 86.5338% -80 - C2 -3P4T 6.9 ?
4 PsiBlast_PDB 86.3838% -78 - C2 -3OIB 7.3 ?
5 PsiBlast_PDB 85.9438% -79 - C2 -3P4T 6.7 ?