@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA2939: (2016-02-12 )
MSNKNNLRYALGALALSVSAASLAAPSEAQQFTEFWTPGKPNPSICKSPLLVSTPLGLPRCLQASNVVKRLQKLEDIASLNDGNRAAATPGYQASVDYVKQTLQKAGYKVSVQPFPFTAYYPKGPGSLSATVPQPVTYEWEKDFTYLSQTEAGDVTAKVVPVDLSLGAGNTSTSGCEAEDFANFPAGSIALIQRGTCNFEQKAENAAAAGAAGVIIFNQGNTDDRKGLENVTVGESYEGGIPVIFATYDNGVAWSQTPDLQLHLVVDVVRKKTETYNVVAETRRGNPNNVVMVGAHLDSVFEGPGINDNGSGSAAQLEMAVLLAKALPVNKVRFAWWGAEEAGLVGSTHYVQNLAPEEKKKIKAYLNFDMIGSPNFGNFIYDGDGSDFGLQGPPGSAAIERLFEAYFRLRGQQSEGTEIDFRSDYAEFFNSGIAFGGLFTGAEGLKTEEQAQKYGGTAGKAYDECYHSKCDGIANINQDALEIHSDAMAFVTSWLSLSTKVVDDEIAAAGQKAQSRSLQMQKSASQIERWGHDFIK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PHE_A_5(1F2P)
APX_STRGG
[Raw transfer]



PHE_A_5(1F2P)
APX_STRGG
[Raw transfer]



MET_A_5(1QQ9)
APX_STRGG
[Raw transfer]



DPN_A_5(1TKH)
APX_STRGG
[Raw transfer]



LEU_A_5(1F2O)
APX_STRGG
[Raw transfer]



TRP_A_5(1TF8)
APX_STRGG
[Raw transfer]



PHI_A_5(1TF9)
APX_STRGG
[Raw transfer]



DTR_A_5(1TKF)
APX_STRGG
[Raw transfer]



MED_A_5(1TKJ)
APX_STRGG
[Raw transfer]



MED_A_5(1TKJ)
APX_STRGG
[Raw transfer]



BES_A_8(2EK9)
?
[Raw transfer]



EDO_C_20(3CPX)
?
[Raw transfer]
12 PsiBlast_PDB 86.4032% -59 - C1 -2EK9 5.0 ?
11 PsiBlast_PDB 86.3932% -58 - C1 -2EK8 - ? -
51 HHSearch 79.1027% -50 - C1 -2EK8 - ? -
53 HHSearch 77.4820% -39 - C1 -3FED - NALD2_HUMAN -
56 HHSearch 76.3654% -42 * C1 *1TKJ 3.3 APX_STRGG
5 PsiBlast_PDB 74.3552% -44 - C1 -1TF8 6.2 APX_STRGG
72 Fugue 74.3243% -34 - C1 -1F2P 3.6 APX_STRGG
9 PsiBlast_PDB 74.2052% -40 - C1 -1TKJ 3.3 APX_STRGG
3 PsiBlast_PDB 73.9052% -40 - C1 -1F2O 3.8 APX_STRGG
2 PsiBlast_PDB 73.6952% -38 - C1 -1QQ9 3.7 APX_STRGG
6 PsiBlast_PDB 73.5852% -41 - C1 -1TF9 3.2 APX_STRGG
4 PsiBlast_PDB 72.6152% -39 - C1 -1F2P 3.5 APX_STRGG
10 PsiBlast_PDB 72.5652% -39 - C1 -1XBU - APX_STRGG -
7 PsiBlast_PDB 72.5152% -40 - C1 -1TKF 4.6 APX_STRGG
8 PsiBlast_PDB 71.9652% -37 - C1 -1TKH 5.7 APX_STRGG
1 PsiBlast_PDB 71.5852% -36 - C1 -1CP7 - APX_STRGG -
54 HHSearch 71.1821% -42 - C1 -3IIB - ? -
52 HHSearch 67.5217% -41 - C1 -3KAS - TFR1_HUMAN -
75 Fugue 64.0517% -27 - C2 -1DE4 - TFR1_HUMAN -
55 HHSearch 58.6316% -48 - C1 -3K9T - PBPAD_CLOAB -