@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA2962: (2016-02-12 )
MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQEDRRFFEAVRQTYLQRAAQAPERYQVLDAGLPLAEVQAGLDRLLPNLLERLNG

Atome Classification :

(54 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

TMP_B_5(4E5U)
KTHY_PSEAE
[Raw transfer]




TMP_A_3(4E5U)
KTHY_PSEAE
[Raw transfer]




Z5A_A_2(5TMP)
KTHY_ECOLI
[Raw transfer]




TYD_A_4(3HJN)
KTHY_THEMA
[Raw transfer]




ATM_A_5(4GMD)
KTHY_PSEAE
[Raw transfer]




ATM_D_15(4GMD)
KTHY_PSEAE
[Raw transfer]




ATM_B_8(4GMD)
KTHY_PSEAE
[Raw transfer]




TYD_B_7(3HJN)
KTHY_THEMA
[Raw transfer]




ATM_C_12(4GMD)
KTHY_PSEAE
[Raw transfer]




T5A_A_2(4TMK)
KTHY_ECOLI
[Raw transfer]




T5A_A_2(4TMK)
KTHY_ECOLI
[Raw transfer]




TYD_A_4(3HJN)
KTHY_THEMA
[Raw transfer]




0DN_A_7(3UXM)
KTHY_PSEAE
[Raw transfer]




THM_A_4(3N2I)
KTHY_VIBCH
[Raw transfer]




0DN_C_11(3UXM)
KTHY_PSEAE
[Raw transfer]




THM_A_2(4ESH)
KTHY_PSEAE
[Raw transfer]




0DJ_B_4(3UWO)
KTHY_PSEAE
[Raw transfer]




0DJ_A_3(3UWO)
KTHY_PSEAE
[Raw transfer]




16T_A_3(4HLD)
KTHY_STAAR
[Raw transfer]




43N_B_4(4XWA)
KTHY_STAA1
[Raw transfer]




43N_A_3(4XWA)
KTHY_STAA1
[Raw transfer]




13Y_A_3(4HDC)
KTHY_STAAN
[Raw transfer]




13Y_B_4(4HDC)
KTHY_STAAN
[Raw transfer]




0DF_B_5(3UWK)
KTHY_PSEAE
[Raw transfer]




32C_B_4(4QGG)
KTHY_STAAR
[Raw transfer]




THM_B_6(3N2I)
KTHY_VIBCH
[Raw transfer]




32C_A_3(4QGG)
KTHY_STAAR
[Raw transfer]




T05_B_4(4HLC)
KTHY_STAAR
[Raw transfer]




32E_B_4(4QGH)
KTHY_STAAR
[Raw transfer]




0DN_D_12(3UXM)
KTHY_PSEAE
[Raw transfer]




16T_B_4(4HLD)
KTHY_STAAR
[Raw transfer]




32K_B_4(4QG7)
KTHY_STAAR
[Raw transfer]




ATM_B_4(4EAQ)
KTHY_STAAM
[Raw transfer]




0DN_B_8(3UXM)
KTHY_PSEAE
[Raw transfer]




32K_A_3(4QG7)
KTHY_STAAR
[Raw transfer]




T05_A_3(4HLC)
KTHY_STAAR
[Raw transfer]




0YB_A_3(4GFD)
KTHY_STAAM
[Raw transfer]




ATM_A_3(4EAQ)
KTHY_STAAM
[Raw transfer]




31Z_A_3(4QGA)
KTHY_STAAR
[Raw transfer]




32E_A_3(4QGH)
KTHY_STAAR
[Raw transfer]




31Z_B_4(4QGA)
KTHY_STAAR
[Raw transfer]




32B_A_3(4QGF)
KTHY_STAAR
[Raw transfer]




14D_A_3(4HEJ)
KTHY_STAAN
[Raw transfer]




0Y5_A_3(4GSY)
KTHY_STAAR
[Raw transfer]




EDO_B_7(3LD9)
KTHY_EHRCR
[Raw transfer]




EDO_D_10(3LD9)
KTHY_EHRCR
[Raw transfer]




MRD_A_3(3V9P)
KTHY_BURTA
[Raw transfer]




MRD_A_3(3V9P)
KTHY_BURTA
[Raw transfer]




MRD_B_7(3V9P)
KTHY_BURTA
[Raw transfer]




ADP_A_4(4EDH)
KTHY_PSEAE
[Raw transfer]




ADP_B_9(4EDH)
KTHY_PSEAE
[Raw transfer]




ADP_A_2(3LV8)
KTHY_VIBCH
[Raw transfer]




ADP_A_2(3LV8)
KTHY_VIBCH
[Raw transfer]




2 PsiBlast_PDB 97.54100%-100 - C2 -4EDH 7.2 KTHY_PSEAE
25 PsiBlast_CBE 97.39100%-100 - C2 -4EDH 7.0 KTHY_PSEAE
4 PsiBlast_PDB 97.39100% -99 - C2 -4GMD 8.3 KTHY_PSEAE
7 PsiBlast_PDB 97.2999%-104 - C2 -4E5U 6.9 KTHY_PSEAE
30 PsiBlast_CBE 96.6099%-104 - C2 -4E5U 6.8 KTHY_PSEAE
3 PsiBlast_PDB 96.52100%-101 - C2 -4ESH 6.1 KTHY_PSEAE
29 PsiBlast_CBE 96.01100% -96 - C2 -3UXM 5.8 KTHY_PSEAE
22 PsiBlast_CBE 95.54100%-102 - C2 -4GMD 7.3 KTHY_PSEAE
23 PsiBlast_CBE 95.30100%-101 - C2 -4GMD 6.9 KTHY_PSEAE
6 PsiBlast_PDB 95.23100%-106 - C2 -3UXM 6.0 KTHY_PSEAE
27 PsiBlast_CBE 95.10100% -98 - C2 -3UXM 5.9 KTHY_PSEAE
28 PsiBlast_CBE 94.86100%-106 - C2 -3UXM 5.9 KTHY_PSEAE
24 PsiBlast_CBE 94.34100%-102 - C2 -4GMD 6.8 KTHY_PSEAE
21 PsiBlast_CBE 94.27100%-103 - C2 -3UWK 7.2 KTHY_PSEAE
5 PsiBlast_PDB 94.22100%-104 - C2 -3UWO 7.7 KTHY_PSEAE
1 PsiBlast_PDB 93.68100% -95 - C2 -3UWK - KTHY_PSEAE -
26 PsiBlast_CBE 92.89100%-105 - C2 -3UWO 7.5 KTHY_PSEAE
31 PsiBlast_CBE 78.5350%-102 - C2 -3V9P 3.2 KTHY_BURTA
90 Fugue 77.6845% -96 - C2 -4TMK 11.4 KTHY_ECOLI
9 PsiBlast_PDB 77.2744% -88 - C2 -4TMK 11.4 KTHY_ECOLI
70 HHSearch 76.8052% -95 - C2 -3V9P 3.1 KTHY_BURTA
32 PsiBlast_CBE 76.7142% -90 - C2 -3N2I 4.8 KTHY_VIBCH
8 PsiBlast_PDB 76.6350% -97 - C2 -3V9P 3.1 KTHY_BURTA
10 PsiBlast_PDB 75.9444% -90 - C2 -5TMP 11.1 KTHY_ECOLI
42 PsiBlast_CBE 75.1137% -89 - C2 -4QGH 7.5 KTHY_STAAR
12 PsiBlast_PDB 74.0442% -91 - C2 -3N2I 4.0 KTHY_VIBCH
11 PsiBlast_PDB 73.7042% -88 - C2 -3LV8 6.2 KTHY_VIBCH
71 HHSearch 73.1943% -86 - C2 -3LV8 6.2 KTHY_VIBCH
20 PsiBlast_PDB 73.0537% -91 - C2 -4HEJ 6.5 KTHY_STAAN
55 PsiBlast_CBE 73.0037% -89 - C2 -4HDC 8.0 KTHY_STAAN
49 PsiBlast_CBE 72.8837% -88 - C2 -4QG7 6.6 KTHY_STAAR
47 PsiBlast_CBE 72.6737% -88 - C2 -4QGA 7.1 KTHY_STAAR
51 PsiBlast_CBE 72.5637% -88 - C2 -4HLD 7.1 KTHY_STAAR
53 PsiBlast_CBE 72.4637% -87 - C2 -4HLC 7.4 KTHY_STAAR
44 PsiBlast_CBE 72.0337% -91 - C2 -4QGG 8.1 KTHY_STAAR
41 PsiBlast_CBE 71.9537% -85 - C2 -4XWA 8.2 KTHY_STAA1
14 PsiBlast_PDB 71.8637% -83 - C2 -4EAQ 5.4 KTHY_STAAM
48 PsiBlast_CBE 71.7937% -84 - C2 -4QGA 7.3 KTHY_STAAR
33 PsiBlast_CBE 71.7737% -91 - C2 -4EAQ 3.9 KTHY_STAAM
50 PsiBlast_CBE 71.7537% -84 - C2 -4QG7 6.6 KTHY_STAAR
40 PsiBlast_CBE 71.3637% -91 - C2 -4XWA 8.9 KTHY_STAA1
46 PsiBlast_CBE 71.2337% -85 - C2 -4QGF 7.4 KTHY_STAAR
52 PsiBlast_CBE 71.2137% -86 - C2 -4HLD 7.0 KTHY_STAAR
43 PsiBlast_CBE 70.7137% -84 - C2 -4QGH 7.6 KTHY_STAAR
54 PsiBlast_CBE 70.6837% -85 - C2 -4HLC 6.9 KTHY_STAAR
74 HHSearch 70.5140% -88 * C2 *3HJN 4.6 KTHY_THEMA
45 PsiBlast_CBE 70.4037% -83 - C2 -4QGG 8.2 KTHY_STAAR
17 PsiBlast_PDB 70.0937% -86 - C2 -4GFD 8.3 KTHY_STAAM
19 PsiBlast_PDB 69.8837% -85 - C2 -4HDC 7.3 KTHY_STAAN
18 PsiBlast_PDB 68.9237% -86 - C2 -4GSY 7.9 KTHY_STAAR
59 PsiBlast_CBE 66.6543% -74 - C2 -3HJN 6.5 KTHY_THEMA
58 PsiBlast_CBE 66.3243% -73 - C2 -3HJN 5.9 KTHY_THEMA
62 PsiBlast_CBE 65.1438% -87 - C2 -3LD9 2.6 KTHY_EHRCR
60 PsiBlast_CBE 63.2338% -81 - C2 -3LD9 2.6 KTHY_EHRCR