@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA2978: (2016-02-12 )
MRVLFVCLGNICRSPTAEGVFRRKVEEAGLASRIHVDSAGTAGWHVGKAPDQRTRLAAQRRGYDLSALRGRQVGIEDFSRHDLILAMDLSNLADLETLRAGRGAAELDLFLRRYGSERDEVPDPYYGGEEGFEQVLDLIEHACDRLLIEAKGRL

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MPO_D_14(4LRQ)
?
[Raw transfer]




MPO_C_11(4LRQ)
?
[Raw transfer]




EPE_A_3(3IDO)
?
[Raw transfer]




MPO_A_5(4LRQ)
?
[Raw transfer]




EPE_A_3(3JS5)
?
[Raw transfer]




MPO_B_8(4LRQ)
?
[Raw transfer]




EPE_B_4(3IDO)
?
[Raw transfer]




PMS_A_5(4Z9A)
?
[Raw transfer]




4NP_D_4(1D1Q)
PPAL_YEAST
[Raw transfer]




4NP_D_4(1D1Q)
PPAL_YEAST
[Raw transfer]




MES_B_2(5PNT)
PPAC_HUMAN
[Raw transfer]




EPE_B_2(1DG9)
PPAC_BOVIN
[Raw transfer]




B85_A_2(4Z9B)
?
[Raw transfer]




EPE_C_3(1D1P)
PPAL_YEAST
[Raw transfer]




EPE_D_4(1D1P)
PPAL_YEAST
[Raw transfer]




GOL_A_3(1U2Q)
PTPA_MYCTU
[Raw transfer]




GOL_E_5(1D1Q)
PPAL_YEAST
[Raw transfer]




ADE_B_6(1D2A)
PPAL_YEAST
[Raw transfer]




21 PsiBlast_CBE 92.6249% -86 - C9 -4LRQ 5.2 ?
23 PsiBlast_CBE 91.9849% -88 - C9 -4LRQ 4.9 ?
22 PsiBlast_CBE 91.9249% -89 - C9 -4LRQ 5.2 ?
1 PsiBlast_PDB 91.3149% -89 - C9 -4LRQ 5.0 ?
66 HHSearch 90.0634% -86 - C9 -1D1Q 4.6 PPAL_YEAST
27 PsiBlast_CBE 89.5144% -97 - C9 -2CWD - ? -
30 PsiBlast_CBE 88.6544% -98 - C9 -2CWD - ? -
67 HHSearch 88.4339% -87 - C9 -3JVI - ? -
10 PsiBlast_PDB 88.2140% -93 - C9 -5PNT 2.8 PPAC_HUMAN
6 PsiBlast_PDB 88.2040%-101 - C9 -4ETM - YFKJ_BACSU -
24 PsiBlast_CBE 88.1240% -93 - C9 -3IDO 4.8 ?
7 PsiBlast_PDB 87.9540% -94 - C9 -4Z99 - ? -
37 PsiBlast_CBE 87.5933% -85 - C9 -1D1Q 2.7 PPAL_YEAST
39 PsiBlast_CBE 87.5433% -85 - C9 -1D2A 3.4 PPAL_YEAST
29 PsiBlast_CBE 87.4944% -92 - C9 -2CWD - ? -
26 PsiBlast_CBE 87.1934% -84 - C9 -1D1P 3.3 PPAL_YEAST
28 PsiBlast_CBE 87.0444% -94 - C9 -2CWD - ? -
2 PsiBlast_PDB 87.0440% -91 - C9 -3IDO 4.7 ?
38 PsiBlast_CBE 87.0033% -85 - C9 -1D1Q 4.6 PPAL_YEAST
11 PsiBlast_PDB 86.7940% -93 - C9 -3N8I - PPAC_HUMAN -
4 PsiBlast_PDB 86.7440% -90 - C9 -3JS5 4.5 ?
13 PsiBlast_PDB 86.6534% -84 - C9 -1D1P 3.8 PPAL_YEAST
8 PsiBlast_PDB 85.7540% -92 - C9 -4Z9A 2.5 ?
9 PsiBlast_PDB 85.3040% -90 - C9 -4Z9B 3.4 ?
14 PsiBlast_PDB 82.8740% -89 - C9 -1DG9 4.7 PPAC_BOVIN
41 PsiBlast_CBE 76.8140% -65 - C9 -1U2Q 2.4 PTPA_MYCTU