@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA2979: (2016-02-12 )
MTQAFTVVIPARYASTRLPGKPLQDIAGQPMIQRVWNQARKSAASRVVVATDDERILAACQGFGAEALLTRAEHNSGTDRLEEVASRLGLASDAIVVNVQGDEPLIPPALIDQVAANLAAHPEAAIATLAEPIHEVSALFNPNVVKVATDIDGLALTFSRAPLPWARDAFARDRDSLPEGVPYRRHIGIYAYRVGFLADFVAWGPCWLENAESLEQLRALWHGVRIHVADARENMLPGVDTPEDLERVRRVLGG

Atome Classification :

(33 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CTP_D_16(3K8D)
KDSB_ECOLI
[Raw transfer]




CTP_C_12(2Y6P)
KDSB_AQUAE
[Raw transfer]




CTP_B_10(3K8D)
KDSB_ECOLI
[Raw transfer]




CTP_A_4(2Y6P)
KDSB_AQUAE
[Raw transfer]




CTP_A_7(3K8D)
KDSB_ECOLI
[Raw transfer]




CTP_C_13(3K8D)
KDSB_ECOLI
[Raw transfer]




CTP_B_9(2Y6P)
KDSB_AQUAE
[Raw transfer]




CTP_A_4(2Y6P)
KDSB_AQUAE
[Raw transfer]




CTP_A_7(3K8D)
KDSB_ECOLI
[Raw transfer]




CMK_A_4(1GQC)
KPSU5_ECOLX
[Raw transfer]




CDP_B_4(1H7H)
KPSU5_ECOLX
[Raw transfer]




CTP_B_6(1GQ9)
KPSU5_ECOLX
[Raw transfer]




CMK_A_4(1VH3)
KDSB_HAEIN
[Raw transfer]




CDP_A_3(1H7H)
KPSU5_ECOLX
[Raw transfer]




C5P_B_6(1GQC)
KPSU5_ECOLX
[Raw transfer]




C5P_B_4(1H7T)
KPSU5_ECOLX
[Raw transfer]




C5P_B_3(1H7F)
KPSU5_ECOLX
[Raw transfer]




CTP_A_4(1GQ9)
KPSU5_ECOLX
[Raw transfer]




CTP_B_4(1H7G)
KPSU5_ECOLX
[Raw transfer]




KDO_A_3(3DUV)
KDSB_HAEIN
[Raw transfer]




IMD_A_2(3JTJ)
KDSB_YERPE
[Raw transfer]




1 PsiBlast_PDB 96.09100%-119 - C1 -4XWI - KDSB_PSEAE -
21 PsiBlast_CBE 90.32100%-128 - C1 -4XWI - KDSB_PSEAE -
2 PsiBlast_PDB 80.2858%-117 - C1 -3OAM - KDSB_VIBCH -
56 HHSearch 78.5658%-111 - C1 -3OAM - KDSB_VIBCH -
6 PsiBlast_PDB 77.7655%-105 - C1 -3K8D 8.6 KDSB_ECOLI
24 PsiBlast_CBE 77.7555%-105 - C1 -3K8D 8.4 KDSB_ECOLI
10 PsiBlast_PDB 77.7554%-118 - C1 -3JTJ 3.3 KDSB_YERPE
7 PsiBlast_PDB 77.3455%-112 - C1 -3K8E - KDSB_ECOLI -
3 PsiBlast_PDB 76.6753%-110 - C1 -1VIC - KDSB_HAEIN -
22 PsiBlast_CBE 76.5755%-105 - C1 -3K8D 8.0 KDSB_ECOLI
23 PsiBlast_CBE 75.7655%-104 - C1 -3K8D 8.1 KDSB_ECOLI
55 HHSearch 75.3954%-103 - C1 -3K8D 8.6 KDSB_ECOLI
9 PsiBlast_PDB 74.3352%-111 - C1 -3TQD - KDSB_COXBU -
57 HHSearch 72.4952%-102 - C1 -1VIC - KDSB_HAEIN -
5 PsiBlast_PDB 71.6453%-118 - C1 -1VH3 7.2 KDSB_HAEIN
4 PsiBlast_PDB 71.3953%-107 - C1 -3DUV 4.5 KDSB_HAEIN
59 HHSearch 70.9050%-108 - C1 -3TQD - KDSB_COXBU -
54 HHSearch 70.5340%-108 - C1 -1H7E - KPSU5_ECOLX -
44 Fugue 68.8943%-103 * C1 *1H7E - KPSU5_ECOLX -
12 PsiBlast_PDB 68.7848%-106 - C1 -4FCU - KDSB_ACIBT -
26 PsiBlast_CBE 66.9642%-102 - C1 -1H7H 5.3 KPSU5_ECOLX
17 PsiBlast_PDB 66.5742%-103 - C1 -1H7H 4.0 KPSU5_ECOLX
25 PsiBlast_CBE 66.5642% -99 - C1 -1H7T 4.1 KPSU5_ECOLX
28 PsiBlast_CBE 66.0142%-101 - C1 -1H7F 4.7 KPSU5_ECOLX
27 PsiBlast_CBE 65.5642% -98 - C1 -1H7G 4.8 KPSU5_ECOLX
29 PsiBlast_CBE 64.9842% -96 - C1 -1GQC 4.7 KPSU5_ECOLX
30 PsiBlast_CBE 64.6642% -97 - C1 -1GQ9 5.8 KPSU5_ECOLX
20 PsiBlast_PDB 64.0642% -95 - C1 -1GQC 7.4 KPSU5_ECOLX
32 PsiBlast_CBE 62.8037%-110 - C1 -2Y6P 7.4 KDSB_AQUAE
19 PsiBlast_PDB 62.7442% -95 - C1 -1GQ9 4.4 KPSU5_ECOLX
33 PsiBlast_CBE 62.5737%-108 - C1 -2Y6P 7.9 KDSB_AQUAE
31 PsiBlast_CBE 62.0037%-107 - C1 -2Y6P 7.2 KDSB_AQUAE
60 HHSearch 61.2136%-104 - C1 -2Y6P 7.9 KDSB_AQUAE