@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA2991: (2016-02-12 )
MAVYNYDVVILGTGPAGEGAAMNASKYGRKLAVVDSRRVVGGNCTHLGTIPSKALRHSVKQIIEFNTNPMFRQIGEPRWFSFPDVLKSADRVISKQVASRTGYYARNRIDMFTGTASFVDERTVEVVTPSGAVERLVADQFVIATGSRPYRPSDINFNHPRVYDSDTILSLSHTPRRLIIYGAGVIGCEYASIFSGLGVLVDLIDTRDQLLSFLDDEISDALSYHLRNNNVLIRHNEEYERVEGLDNGVILHLKSGKKIKADALLWCNGRTGNTDKLGLENVGIKVNSRGQIEVDENYRTSVSNIFAAGDVIGWPSLASAAYDQGRSAAGNIVESDSWRFVNDVPTGIYTIPEISSIGKNESELTAAKIPYEVGKAFFKGMARAQISNEPVGMLKILFHRETLEILGVHCFGDQASEIVHIGQAIMNQPGELNTLKYFVNTTFNYPTMAEAYRVAAFDGLNRLF

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_A_4(1EBD)
DLDH1_GEOSE
[Raw transfer]



FAD_A_3(3URH)
?
[Raw transfer]



FAD_A_3(3URH)
?
[Raw transfer]



FAD_A_4(1EBD)
DLDH1_GEOSE
[Raw transfer]



FAD_B_8(2YQU)
?
[Raw transfer]



FAD_B_5(1EBD)
DLDH1_GEOSE
[Raw transfer]



FAD_A_7(2YQU)
?
[Raw transfer]



FAD_A_7(2YQU)
?
[Raw transfer]
39 HHSearch 94.1232% -92 - C1 -2YQU 11.0 ?
36 HHSearch 93.7531% -92 - C1 -2EQ6 - ? -
41 HHSearch 92.3531% -98 * C1 *1EBD 11.2 DLDH1_GEOSE
25 HHSearch 90.8529% -93 - C1 -2QAE - DLDH_TRYCR -
4 PsiBlast_PDB 89.9331% -95 - C1 -1EBD 11.2 DLDH1_GEOSE
23 PsiBlast_CBE 89.6831% -92 - C1 -1EBD 10.8 DLDH1_GEOSE
26 HHSearch 89.6728% -95 - C1 -1ZMD - DLDH_HUMAN -
3 PsiBlast_PDB 89.5630% -94 - C1 -3URH 10.8 ?
31 HHSearch 89.1027% -95 - C1 -3LAD - DLDH_AZOVI -
28 HHSearch 88.7130% -93 - C1 -3URH 11.0 ?
15 PsiBlast_PDB 87.7227% -98 - C1 -3LAD - DLDH_AZOVI -
14 PsiBlast_PDB 87.6629% -95 - C1 -1LPF - DLDH_PSEFL -
32 HHSearch 87.5029% -92 - C1 -1DXL - DLDH_PEA -
2 PsiBlast_PDB 86.5034% -93 - C1 -2YQU 11.0 ?
6 PsiBlast_PDB 85.0530% -88 - C1 -4JQ9 - ? -
5 PsiBlast_PDB 84.6830% -87 - C1 -4JDR - DLDH_ECOLI -
21 PsiBlast_CBE 84.6134% -92 - C1 -2YQU 11.2 ?
22 PsiBlast_CBE 84.4834% -93 - C1 -2EQ7 - ? -
18 PsiBlast_PDB 84.4129% -85 - C1 -2EQ6 - ? -
1 PsiBlast_PDB 84.3534% -92 - C1 -2EQ7 - ? -