@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3005: (2016-02-13 )
MQGSLMLDIGGTWLTAEDRQILRHPEVGGLIIFARNIEHPAQVRELCAAIRAIRPDLLLAVDQEGGRVQRLRQGFVRLPAMRAIADNPNAEELAEHCGWLMATEVQAVGLDLSFAPVLDLDHQRSAVVGSRAFEGDPERAALLAGAFIRGMHAAGMAATGKHFPGHGWAEADSHVAIPEDARSLEEIRRSDLVPFARLAGQLDALMPAHVIYPQVDPQPAGFSRRWLQEILRGELKFDGVIFSDDLSMAGAHVVGDAASRIEAALAAGCDMGLVCNDRASAELALAALQRLKVTPPSRLQRMRGKGYANTDYRQQPRWLEALSALRAAQLID

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDG_B_5(4GVF)
NAGZ_SALTY
[Raw transfer]




NDG_A_3(4GVF)
NAGZ_SALTY
[Raw transfer]




NAG_B_7(4GNV)
?
[Raw transfer]




NAG_A_3(4GNV)
?
[Raw transfer]




NAG_B_2(1Y65)
NAGZ_VIBCH
[Raw transfer]




1BW_B_4(4HZM)
NAGZ_SALTY
[Raw transfer]




1BW_A_3(4HZM)
NAGZ_SALTY
[Raw transfer]




0XY_A_3(4GVH)
NAGZ_SALTY
[Raw transfer]




0XY_B_5(4GVH)
NAGZ_SALTY
[Raw transfer]




OAN_A_2(2OXN)
NAGZ_VIBCH
[Raw transfer]




OAN_A_2(2OXN)
NAGZ_VIBCH
[Raw transfer]




BA4_A_2(3GS6)
NAGZ_VIBCH
[Raw transfer]




VPU_A_2(3GSM)
NAGZ_VIBCH
[Raw transfer]




GOL_A_3(5BU9)
?
[Raw transfer]




GOL_A_4(3GSM)
NAGZ_VIBCH
[Raw transfer]




MES_A_3(4GVG)
NAGZ_SALTY
[Raw transfer]




MUB_A_4(4GYJ)
NAGZ_BACSU
[Raw transfer]




SUGAR_A_3(4GYK)
NAGZ_BACSU
[Raw transfer]

-

ACY_A_3(3SQL)
?
[Raw transfer]




AH0_B_5(4GVI)
NAGZ_SALTY
[Raw transfer]




ACY_A_9(3SQL)
?
[Raw transfer]




26 PsiBlast_CBE 98.4550% -93 - C6 -4GNV 4.1 ?
25 PsiBlast_CBE 98.4050% -92 - C6 -4MSS - ? -
5 PsiBlast_PDB 97.5550% -96 - C6 -4G6C - ? -
6 PsiBlast_PDB 97.4550% -91 - C6 -4GNV 4.1 ?
1 PsiBlast_PDB 96.9150% -96 - C6 -4GVF 3.3 NAGZ_SALTY
3 PsiBlast_PDB 96.8850% -96 - C6 -4GVH 3.7 NAGZ_SALTY
24 PsiBlast_CBE 96.4550% -98 - C6 -4GVF 3.3 NAGZ_SALTY
22 PsiBlast_CBE 96.3750%-100 - C6 -4GVH 3.8 NAGZ_SALTY
2 PsiBlast_PDB 96.2450% -95 - C6 -4GVG 1.9 NAGZ_SALTY
21 PsiBlast_CBE 96.1750% -96 - C6 -4HZM 3.7 NAGZ_SALTY
23 PsiBlast_CBE 96.0750% -96 - C6 -4GVG - NAGZ_SALTY -
27 PsiBlast_CBE 96.0150% -94 - C6 -4GVI 3.0 NAGZ_SALTY
4 PsiBlast_PDB 95.8550% -98 - C6 -4HZM 3.7 NAGZ_SALTY
7 PsiBlast_PDB 92.2748% -89 - C6 -1Y65 3.3 NAGZ_VIBCH
8 PsiBlast_PDB 91.7848% -86 - C6 -2OXN 3.8 NAGZ_VIBCH
9 PsiBlast_PDB 91.5348% -88 - C6 -3GS6 3.5 NAGZ_VIBCH
10 PsiBlast_PDB 91.4248% -91 - C6 -3GSM 3.0 NAGZ_VIBCH
49 HHSearch 90.3847% -87 - C6 -2OXN 3.8 NAGZ_VIBCH
52 HHSearch 81.6429% -87 - C6 -3SQL - ? -
39 Fugue 80.9526% -78 - C6 -3BMX - NAGZ_BACSU -
18 PsiBlast_PDB 71.4035% -76 - C6 -3SQL 3.5 ?
20 PsiBlast_PDB 60.1534% -23 - C6 -5BU9 1.8 ?