@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3014: (2016-02-13 )
MIYQGKAITVKPLEGGIVELNFDLKGESVNKFNRLTLSELRAAVDAIKADASVKGVIVTSGKDVFIVGADITEFVDNFQLPDEELMAGNLEANKIFSDFEDLDVPTVAAINGIALGGGLEMCLAADFRVMSATAKVGLPEVKLGIYPGFGGTVRLPRLIGCDNAVEWIASGKENKAEDALKVGAVDAVVAPEQLQAAALDLAKRAVAGELDHKARRQPKLEKLKLNAIEQMMAFETAKGFVAGQAGPNYPAPVEAIKSIQKAANFGRDKALEVEAAGFVKLAKTSVAQSLIGLFLNDQELKKKAKKYDEVAKDVKLAAVLGAGIMGGGIAYQSALKGTPILMKDIREEGIQMGLNEAAKLLGKRVEKGRLTPAKMAEALNGIRPTMSYGDFGNVDIVVEAVVENPKVKQAVLAEVEGAVKEDAIIASNTSTISISLLAQALKRPENFCGMHFFNPVHMMPLVEVIRGEKTGETAIATTVAYAKKMGKSPIVVNDCPGFLVNRVLFPYFGGFAKLLSFGVDFVRIDKVMEKFGWPMGPAYLSDVVGIDTGHHGRDVMAEGFPDRMAVEGKTAVDVMYEANRLGQKNGKGFYAYETDKRGKPKKVTDPQAYEVLKPIVVEQREVTDEDIVNFMMIPLCLETVRCLEDGIVETAAEADMGLIYGIGFPPFRGGALRYIDSIGVAEFVALADKYAELGALYHPTAKLREMAKNGQKFFG

Atome Classification :

(45 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_A_5(4KUG)
?
[Raw transfer]




NAD_B_6(4KUG)
?
[Raw transfer]




NAD_D_8(4KUG)
?
[Raw transfer]




NAD_C_7(4KUG)
?
[Raw transfer]




NAD_A_3(3HAD)
HCDH_HUMAN
[Raw transfer]




NAI_A_3(1F17)
HCDH_HUMAN
[Raw transfer]




NAD_C_3(1LSO)
HCDH_HUMAN
[Raw transfer]




NAI_B_4(1F17)
HCDH_HUMAN
[Raw transfer]




NAD_B_4(3HAD)
HCDH_HUMAN
[Raw transfer]




NAD_D_4(1LSO)
HCDH_HUMAN
[Raw transfer]




NAD_F_6(3HDH)
HCDH_PIG
[Raw transfer]




NAD_C_3(1LSJ)
HCDH_HUMAN
[Raw transfer]




NAD_D_4(1LSJ)
HCDH_HUMAN
[Raw transfer]




NAD_E_5(3HDH)
HCDH_PIG
[Raw transfer]




CAA_C_3(1F0Y)
HCDH_HUMAN
[Raw transfer]




CAA_C_3(1F0Y)
HCDH_HUMAN
[Raw transfer]




CAA_C_3(1IL0)
HCDH_HUMAN
[Raw transfer]




CAA_C_3(1M76)
HCDH_HUMAN
[Raw transfer]




3HC_C_3(1F12)
HCDH_HUMAN
[Raw transfer]




CAA_D_4(1IL0)
HCDH_HUMAN
[Raw transfer]




CAA_C_3(1IL0)
HCDH_HUMAN
[Raw transfer]




CAA_C_3(1M75)
HCDH_HUMAN
[Raw transfer]




CAA_D_4(1F0Y)
HCDH_HUMAN
[Raw transfer]




CAA_D_4(1M75)
HCDH_HUMAN
[Raw transfer]




CAA_D_4(1M76)
HCDH_HUMAN
[Raw transfer]




104 Fugue 99.4386%-108 - C2 -1WDK - FADB_PSEFR -
24 PsiBlast_CBE 99.0286%-108 - C2 -1WDK - FADB_PSEFR -
2 PsiBlast_PDB 98.3486%-108 - C2 -1WDM - FADB_PSEFR -
22 PsiBlast_CBE 98.3386%-108 - C2 -1WDM - FADB_PSEFR -
23 PsiBlast_CBE 97.9986%-106 * C2 *1WDL - FADB_PSEFR -
21 PsiBlast_CBE 97.9786%-107 - C2 -2D3T - FADB_PSEFR -
1 PsiBlast_PDB 97.5786%-103 - C2 -1WDL - FADB_PSEFR -
27 PsiBlast_CBE 70.6033% -82 - C2 -4B3H - ? -
4 PsiBlast_PDB 70.4133% -84 - C2 -4B3H - ? -
25 PsiBlast_CBE 69.7833% -83 - C2 -4B3J - ? -
5 PsiBlast_PDB 69.3433% -83 - C2 -4B3I - ? -
6 PsiBlast_PDB 69.2133% -84 - C2 -4B3J - ? -
26 PsiBlast_CBE 68.9833% -81 - C2 -4B3I - ? -
113 HHSearch 67.9232% -87 - C2 -2WTB - MFP2_ARATH -
3 PsiBlast_PDB 66.7432% -83 - C2 -2WTB - MFP2_ARATH -
11 PsiBlast_PDB 63.1531% -78 - C2 -3ZWC - ECHP_RAT -
31 PsiBlast_CBE 63.0031% -77 - C2 -3ZW9 - ECHP_RAT -
28 PsiBlast_CBE 62.6331% -76 - C2 -2X58 - ECHP_RAT -
8 PsiBlast_PDB 62.5431% -74 - C2 -3ZW8 - ECHP_RAT -
29 PsiBlast_CBE 62.4131% -78 - C2 -3ZWC - ECHP_RAT -
18 PsiBlast_PDB 40.5739% -78 - C2 -4KUG 9.6 ?
50 PsiBlast_CBE 39.1839% -74 - C2 -4KUG 8.6 ?
49 PsiBlast_CBE 38.6639% -74 - C2 -4KUG 9.0 ?
51 PsiBlast_CBE 37.9339% -76 - C2 -4KUG 8.8 ?
119 HHSearch 34.9934% -66 - C2 -1F0Y 5.3 HCDH_HUMAN
105 Fugue 34.7833% -64 - C2 -1IL0 5.4 HCDH_HUMAN
61 PsiBlast_CBE 34.6735% -76 - C2 -3HDH 9.3 HCDH_PIG
63 PsiBlast_CBE 34.5834% -69 - C2 -3HAD 9.0 HCDH_HUMAN
71 PsiBlast_CBE 34.2834% -69 - C2 -1LSJ 7.0 HCDH_HUMAN
78 PsiBlast_CBE 34.0034% -69 - C2 -1M75 5.4 HCDH_HUMAN
65 PsiBlast_CBE 33.2234% -70 - C2 -1F17 9.3 HCDH_HUMAN
62 PsiBlast_CBE 33.1734% -67 - C2 -3HAD 9.5 HCDH_HUMAN
64 PsiBlast_CBE 33.0134% -66 - C2 -1F17 9.0 HCDH_HUMAN
69 PsiBlast_CBE 32.9934% -63 - C2 -1F0Y 6.1 HCDH_HUMAN
68 PsiBlast_CBE 32.9034% -65 - C2 -1F0Y 6.5 HCDH_HUMAN
60 PsiBlast_CBE 32.8635% -69 - C2 -3HDH 8.9 HCDH_PIG
72 PsiBlast_CBE 32.7734% -61 - C2 -1IL0 6.2 HCDH_HUMAN
67 PsiBlast_CBE 32.6534% -69 - C2 -1F12 6.4 HCDH_HUMAN
76 PsiBlast_CBE 32.5234% -64 - C2 -1M76 5.1 HCDH_HUMAN
70 PsiBlast_CBE 32.5234% -65 - C2 -1LSJ 7.5 HCDH_HUMAN
77 PsiBlast_CBE 32.2834% -61 - C2 -1M76 5.3 HCDH_HUMAN
75 PsiBlast_CBE 32.1534% -68 - C2 -1LSO 8.9 HCDH_HUMAN
79 PsiBlast_CBE 32.0034% -64 - C2 -1M75 6.0 HCDH_HUMAN
73 PsiBlast_CBE 31.9334% -63 - C2 -1IL0 5.9 HCDH_HUMAN
74 PsiBlast_CBE 31.2434% -68 - C2 -1LSO 9.1 HCDH_HUMAN