@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3083: (2016-02-13 )
MRTEQPKVIHLKDYQAPDYLIDETHLKFELFEDHSLVHAELKLRRNPERGAGLPPLLLHGQQLELLALELDGQALGADDYQLDDEQLGVQPRQAEFVLRSTVRIHPESNTALEGLYKSGKMFCTQCEAEGFRKITYYLDRPDVMSRFTTTVSAEQQRYPVLLSNGNPVASGSEGNGRHWATWEDPFKKPAYLFALVAGDLWCVEDSFRTMSQRDVALRIYVEPENIDKVQHAMDSLKKSMRWDEEVYGREYDLDIFMIVAVNDFNMGAMENKGLNIFNSSCVLARAETATDAAHQRVEGVVAHEYFHNWSGNRVTCRDWFQLSLKEGFTVFRDSEFSADMNSRTVKRVEDVAFLRTNQFAEDAGPMAHPVRPDSFIEISNFYTLTVYEKGSEVVRMIHTLLGAEGFRKGSDLYFQRHDGQAVTCDDFVKAMEDANGVDLTQFKRWYSQSGTPRLAVEGEYDAAARRYTLTVRQSCPPTPGQPSKEPFVIPLELGLLDGQGHELPLRLEGEAVAQGGNRVLAVTEAEQRFVFVEVPEQPLPSLLRGFSAPVKLSFPYSRDQLLFLMQHDSDGFNRWEAGQQLSVQVLQELIGQHQRGEQLVLDPRLIEAYRTLLADEALDQAMVAEMLSLPSEAYLTEISEVADVDAIHAAREFARQRIGEALFEPLWQRYQANRKISRDTAYLAEASHIARRSLQNIALSYLSLSGREEILAACLEQYEGCDNMTERLTALAVLVNSGFEAEKGKALAMFADYFKDDPLVMDQWFSVQAGSPLPGGLERVQELMQHPAFTLKNPNKVRALIGAFANQNLVNFHRPDGAGYRFLADQVIVLNALNPQIASRLLVPLTRWRKYDEARQALMRGELERILASGELSSDVYEVVSKSLA

Atome Classification :

(37 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

1OT_A_7(4K5O)
AMP1_PLAFQ
[Raw transfer]




2X0_A_2(4PW4)
?
[Raw transfer]




TRP_A_5(3B3B)
AMPN_ECOLI
[Raw transfer]




3DZ_A_2(4QUO)
?
[Raw transfer]




BEY_A_3(3EBI)
AMP1_PLAFQ
[Raw transfer]




BES_A_5(2DQM)
AMPN_ECOLI
[Raw transfer]




BES_A_3(3EBH)
AMP1_PLAFQ
[Raw transfer]




BES_A_3(2HPT)
AMPN_ECOLI
[Raw transfer]




1OU_A_7(4K5N)
AMP1_PLAFQ
[Raw transfer]




2WW_A_2(4PVB)
?
[Raw transfer]




D66_A_11(3Q43)
AMP1_PLAFQ
[Raw transfer]




1OS_A_7(4K5P)
AMP1_PLAFQ
[Raw transfer]




19N_A_3(4K5L)
AMP1_PLAFQ
[Raw transfer]




ARG_A_5(3B2P)
AMPN_ECOLI
[Raw transfer]




D50_A_3(3Q44)
AMP1_PLAFQ
[Raw transfer]




LYS_A_5(3B2X)
AMPN_ECOLI
[Raw transfer]




ARG_A_2(4J3B)
AMP1_PLAFQ
[Raw transfer]




PHE_A_5(3B34)
AMPN_ECOLI
[Raw transfer]




1OV_A_7(4K5M)
AMP1_PLAFQ
[Raw transfer]




TYR_A_5(3B37)
AMPN_ECOLI
[Raw transfer]




PHE_A_5(3B34)
AMPN_ECOLI
[Raw transfer]




PHE_A_5(3B34)
AMPN_ECOLI
[Raw transfer]




S23_A_3(2ZXG)
AMPN_ECOLI
[Raw transfer]




DAB_A_3(3KED)
AMPN_ECOLI
[Raw transfer]




R5T_A_13(4R5T)
AMP1_PLAFQ
[Raw transfer]




GOL_A_10(3B34)
AMPN_ECOLI
[Raw transfer]




R5X_A_8(4R5X)
AMP1_PLAFQ
[Raw transfer]




BTJ_A_6(3T8V)
AMP1_PLAFQ
[Raw transfer]




GOL_A_13(3B2X)
AMPN_ECOLI
[Raw transfer]




R5V_A_3(4R5V)
AMP1_PLAFQ
[Raw transfer]




GOL_A_8(3EBG)
AMP1_PLAFQ
[Raw transfer]




TOD_A_3(4X2U)
AMP1_PLAFQ
[Raw transfer]




BB2_A_3(4Q4E)
AMPN_ECOLI
[Raw transfer]




2 PsiBlast_PDB 96.1150% -73 - C3 -2DQM 5.2 AMPN_ECOLI
3 PsiBlast_PDB 96.0550% -73 - C3 -2ZXG 6.0 AMPN_ECOLI
15 PsiBlast_PDB 95.9650% -72 - C3 -3PUU - AMPN_ECOLI -
13 PsiBlast_PDB 95.9250% -74 * C3 *4Q4E 5.7 AMPN_ECOLI
7 PsiBlast_PDB 95.9150% -73 - C3 -3B2P 3.6 AMPN_ECOLI
74 Fugue 95.8950% -73 - C3 -3B34 3.3 AMPN_ECOLI
6 PsiBlast_PDB 95.8550% -74 - C3 -3KED 4.3 AMPN_ECOLI
8 PsiBlast_PDB 95.8250% -73 - C3 -3B2X 3.3 AMPN_ECOLI
11 PsiBlast_PDB 95.7750% -73 - C3 -3B3B 3.9 AMPN_ECOLI
9 PsiBlast_PDB 95.7250% -73 - C3 -3B34 3.3 AMPN_ECOLI
10 PsiBlast_PDB 95.6150% -73 - C3 -3B37 4.2 AMPN_ECOLI
64 HHSearch 95.5950% -72 - C3 -3B34 3.3 AMPN_ECOLI
14 PsiBlast_PDB 95.5450% -73 - C3 -4Q4I - AMPN_ECOLI -
1 PsiBlast_PDB 95.4450% -73 - C3 -2DQ6 - AMPN_ECOLI -
4 PsiBlast_PDB 95.4250% -73 - C3 -2HPO - AMPN_ECOLI -
5 PsiBlast_PDB 95.3850% -72 - C3 -2HPT 5.3 AMPN_ECOLI
12 PsiBlast_PDB 93.7350% -84 - C- -3QJX - AMPN_ECOLI -
19 PsiBlast_PDB 90.7347% -71 - C3 -4PVB 2.8 ?
16 PsiBlast_PDB 90.5745% -77 - C3 -5DLL - ? -
17 PsiBlast_PDB 90.5647% -71 - C3 -4QUO 6.5 ?
20 PsiBlast_PDB 90.4347% -70 - C3 -4PW4 3.7 ?
35 PsiBlast_CBE 85.9935% -71 - C3 -3T8V 8.0 AMP1_PLAFQ
25 PsiBlast_CBE 85.9035% -70 - C3 -4R5X 6.2 AMP1_PLAFQ
33 PsiBlast_CBE 85.8935% -73 - C3 -3EBH 5.7 AMP1_PLAFQ
22 PsiBlast_CBE 85.8935% -72 - C3 -3Q43 6.5 AMP1_PLAFQ
32 PsiBlast_CBE 85.8035% -70 - C3 -4K5N 3.6 AMP1_PLAFQ
29 PsiBlast_CBE 85.7335% -72 - C3 -4R5T 6.9 AMP1_PLAFQ
21 PsiBlast_CBE 85.6235% -71 - C3 -3Q44 6.8 AMP1_PLAFQ
36 PsiBlast_CBE 85.5935% -70 - C3 -4J3B 3.5 AMP1_PLAFQ
24 PsiBlast_CBE 85.5535% -71 - C3 -4K5L 2.8 AMP1_PLAFQ
30 PsiBlast_CBE 85.5335% -70 - C3 -4K5P 3.2 AMP1_PLAFQ
27 PsiBlast_CBE 85.4635% -71 - C3 -4X2U 4.9 AMP1_PLAFQ
34 PsiBlast_CBE 85.4235% -71 - C3 -3EBG 3.0 AMP1_PLAFQ
23 PsiBlast_CBE 85.4135% -72 - C3 -4K5M 3.2 AMP1_PLAFQ
28 PsiBlast_CBE 85.4035% -72 - C3 -4R5V 6.3 AMP1_PLAFQ
26 PsiBlast_CBE 85.3935% -69 - C3 -3EBI 5.9 AMP1_PLAFQ
31 PsiBlast_CBE 84.8335% -71 - C3 -4K5O 4.4 AMP1_PLAFQ