@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3088: (2016-02-13 )
MEPFRNIGIIGRLGSTQVLDTIRRLKKFLIDRHLHVILEDTIAEVLPGHGLQTCSRKIMGEICDLVVVVGGDGSMLGAARALARHKVPVLGINRGSLGFLTDIRPDELEAKVGEVLDGQYIVESRFLLDAQVRRGIDSMGQGDALNDVVLHPGKSTRMIEFELYIDGQFVCSQKADGLIVATPTGSTAYALSAGGPIMHPKLDAIVIVPMYPHMLSSRPIVVDGNSELKIVVSPNMQIYPQVSCDGQNHFTCAPGDTVTISKKPQKLRLIHPIDHNYYEICRTKLGWGSRLGGGD

Atome Classification :

(44 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAP_M_13(1Z0U)
NADK_ARCFU
[Raw transfer]




NAP_H_8(1SUW)
NADK_ARCFU
[Raw transfer]




NAP_F_6(1SUW)
NADK_ARCFU
[Raw transfer]




NAP_E_5(1SUW)
NADK_ARCFU
[Raw transfer]




NAP_G_7(1SUW)
NADK_ARCFU
[Raw transfer]




NAP_K_11(1Z0U)
NADK_ARCFU
[Raw transfer]




NAD_H_8(1Z0Z)
NADK_ARCFU
[Raw transfer]




NAI_A_3(3AFO)
POS5_YEAST
[Raw transfer]




NAD_G_7(1Z0Z)
NADK_ARCFU
[Raw transfer]




NAD_G_7(1Y3I)
NADK_MYCTU
[Raw transfer]




NAD_E_5(1Z0Z)
NADK_ARCFU
[Raw transfer]




NAD_F_6(1Z0Z)
NADK_ARCFU
[Raw transfer]




NAD_I_9(1Y3I)
NADK_MYCTU
[Raw transfer]




ZAS_A_2(3V7W)
NADK1_LISMO
[Raw transfer]




AOC_A_3(3V80)
NADK1_LISMO
[Raw transfer]




MTA_A_2(3V7U)
NADK1_LISMO
[Raw transfer]




A3N_A_4(3V7Y)
NADK1_LISMO
[Raw transfer]




5NB_A_2(3V8R)
NADK1_LISMO
[Raw transfer]




5NB_A_2(3V8N)
NADK1_LISMO
[Raw transfer]




GOL_A_3(3V8Q)
NADK1_LISMO
[Raw transfer]




GOL_A_5(3V7W)
NADK1_LISMO
[Raw transfer]




Z8B_A_2(3V8M)
NADK1_LISMO
[Raw transfer]




CC5_A_3(2I2B)
NADK1_LISMO
[Raw transfer]




ATP_D_12(1Z0S)
NADK_ARCFU
[Raw transfer]




ATP_B_10(1Z0S)
NADK_ARCFU
[Raw transfer]




ATP_C_11(1Z0S)
NADK_ARCFU
[Raw transfer]




ATP_A_9(1Z0S)
NADK_ARCFU
[Raw transfer]




ACY_B_13(4HAO)
NADK_YERPE
[Raw transfer]




49 Fugue 97.6650%-135 - C6 -2AN1 - NADK_SALTY -
21 PsiBlast_CBE 96.5347%-138 - C6 -4HAO 3.5 NADK_YERPE
2 PsiBlast_PDB 96.4247%-140 - C6 -4HAO - NADK_YERPE -
1 PsiBlast_PDB 95.7148%-137 - C6 -2AN1 - NADK_SALTY -
58 HHSearch 83.4931%-117 - C6 -3PFN - NADK_HUMAN -
60 HHSearch 82.5128%-118 - C6 -3AFO - POS5_YEAST -
4 PsiBlast_PDB 78.2233%-124 - C6 -1U0R - NADK_MYCTU -
59 HHSearch 77.7929%-116 - C6 -1U0T - NADK_MYCTU -
5 PsiBlast_PDB 77.1933%-125 - C6 -1U0T - NADK_MYCTU -
3 PsiBlast_PDB 75.7133%-122 - C6 -1Y3H - NADK_MYCTU -
62 HHSearch 74.0331%-112 - C6 -1YT5 - NADK_THEMA -
25 PsiBlast_CBE 70.9633%-114 - C6 -1YT5 - NADK_THEMA -
61 HHSearch 70.8427%-114 - C6 -1Z0S - NADK_ARCFU -
23 PsiBlast_CBE 70.7933%-108 - C6 -1YT5 - NADK_THEMA -
51 Fugue 70.3626%-106 * C6 *1SUW - NADK_ARCFU -
7 PsiBlast_PDB 70.2833%-112 - C6 -1YT5 - NADK_THEMA -
24 PsiBlast_CBE 68.9133%-114 - C6 -1YT5 - NADK_THEMA -
22 PsiBlast_CBE 67.4333%-117 - C6 -1Y3I 5.9 NADK_MYCTU
9 PsiBlast_PDB 66.7334%-121 - C6 -3PFN - NADK_HUMAN -
6 PsiBlast_PDB 66.3333%-113 - C6 -1Y3I 5.9 NADK_MYCTU
8 PsiBlast_PDB 65.4534%-107 - C6 -3AFO 6.4 POS5_YEAST
30 PsiBlast_CBE 63.7932%-109 - C6 -1Z0S 4.3 NADK_ARCFU
32 PsiBlast_CBE 63.3532%-108 - C6 -1Z0S 4.3 NADK_ARCFU
13 PsiBlast_PDB 63.2632%-108 - C6 -1SUW 7.6 NADK_ARCFU
31 PsiBlast_CBE 63.1532%-110 - C6 -1Z0S 4.3 NADK_ARCFU
10 PsiBlast_PDB 63.0932%-108 - C6 -1Z0S 4.6 NADK_ARCFU
27 PsiBlast_CBE 63.0032%-110 - C6 -1Z0Z 6.2 NADK_ARCFU
29 PsiBlast_CBE 62.9032%-109 - C6 -1Z0U 6.8 NADK_ARCFU
11 PsiBlast_PDB 62.8032%-105 - C6 -1Z0U 7.4 NADK_ARCFU
33 PsiBlast_CBE 62.5632%-109 - C6 -1SUW 7.7 NADK_ARCFU
28 PsiBlast_CBE 62.5532%-111 - C6 -1Z0Z 6.0 NADK_ARCFU
35 PsiBlast_CBE 61.9932%-106 - C6 -1SUW 7.3 NADK_ARCFU
34 PsiBlast_CBE 61.4832%-106 - C6 -1SUW 7.1 NADK_ARCFU
26 PsiBlast_CBE 60.9732%-101 - C6 -1Z0Z 6.7 NADK_ARCFU
12 PsiBlast_PDB 60.6132%-107 - C6 -1Z0Z 6.7 NADK_ARCFU
38 PsiBlast_CBE 54.2231%-112 - C6 -3V8N 4.0 NADK1_LISMO
42 PsiBlast_CBE 54.1131%-110 - C6 -3V7W 3.8 NADK1_LISMO
43 PsiBlast_CBE 53.7831%-112 - C6 -3V7U 4.4 NADK1_LISMO
40 PsiBlast_CBE 53.7831%-114 - C6 -3V80 3.8 NADK1_LISMO
20 PsiBlast_PDB 53.5431%-114 - C6 -2I2B 3.6 NADK1_LISMO
16 PsiBlast_PDB 52.4831%-114 - C6 -3V8R 4.0 NADK1_LISMO
41 PsiBlast_CBE 51.7031%-114 - C6 -3V7Y 4.2 NADK1_LISMO
15 PsiBlast_PDB 51.3031%-112 - C6 -3V8Q 3.1 NADK1_LISMO
39 PsiBlast_CBE 50.3331%-115 - C6 -3V8M 3.5 NADK1_LISMO