@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3106: (2016-02-13 )
MIEPNLRGNGKVALVTGAARGIGLGISAWLIAEGWQVVLADNDRERGARVAEALGEHAWFVAMDVAQEGQVAMSVAEVLGQFGRLDGLVCNAAIANPRNTPLEALSLGEWTRTLAVNLTGPMLLAKYCTPYLRAHNGAIVNIASTRAHQSEPDSEAYAASKGGLLALTHALAASLGPDIRVNALSPGWIDTREAAEREAAPLTELDHDQHLVGRVGTVEDVASLVAWLLSEDAGFVTGQEFLVDGGMTRKMIYLD

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_H_8(2D1Y)
?
[Raw transfer]




NAD_F_6(2D1Y)
?
[Raw transfer]




NAI_E_5(2DTE)
?
[Raw transfer]




NAD_E_5(2D1Y)
?
[Raw transfer]




NAD_G_7(2D1Y)
?
[Raw transfer]




NAD_A_3(3GEG)
?
[Raw transfer]




NAD_A_5(2CFC)
HCDR_XANP2
[Raw transfer]




NAI_G_7(2DTE)
?
[Raw transfer]




NAD_B_7(3GEG)
?
[Raw transfer]




GOL_B_7(3GED)
?
[Raw transfer]




GOL_A_4(3GEG)
?
[Raw transfer]




GOL_B_8(3GEG)
?
[Raw transfer]




GOL_A_3(3GED)
?
[Raw transfer]




THJ_A_4(3GED)
?
[Raw transfer]




24 PsiBlast_CBE 89.5544%-101 - C1 -2D1Y 10.1 ?
25 PsiBlast_CBE 86.4344%-105 - C1 -2D1Y 10.0 ?
4 PsiBlast_PDB 85.7944%-102 - C1 -2D1Y 10.5 ?
23 PsiBlast_CBE 85.3144%-101 - C1 -2D1Y 10.2 ?
35 PsiBlast_CBE 82.8738% -97 - C1 -1VL8 - ? -
90 PsiBlast_CBE 82.0537% -98 - C1 -2HSD - HSD_STREX -
85 PsiBlast_CBE 81.9832% -99 - C1 -1GEG - BUDC_KLEPN -
83 PsiBlast_CBE 81.7232% -97 - C1 -1GEG - BUDC_KLEPN -
75 PsiBlast_CBE 81.6433% -98 - C1 -2PNF - FABG_AQUAE -
74 PsiBlast_CBE 81.4933%-102 - C1 -2PNF - FABG_AQUAE -
7 PsiBlast_PDB 81.4235%-100 - C1 -2DTE 10.6 ?
92 PsiBlast_CBE 81.3137% -97 - C1 -2HSD - HSD_STREX -
84 PsiBlast_CBE 81.2332%-100 - C1 -1GEG - BUDC_KLEPN -
87 PsiBlast_CBE 81.1932% -98 - C1 -1GEG - BUDC_KLEPN -
11 PsiBlast_PDB 81.1638% -95 - C1 -1VL8 - ? -
86 PsiBlast_CBE 81.1332%-100 - C1 -1GEG - BUDC_KLEPN -
82 PsiBlast_CBE 81.1032%-100 - C1 -1GEG - BUDC_KLEPN -
66 PsiBlast_CBE 81.1037%-101 - C1 -3SJ7 - ? -
8 PsiBlast_PDB 80.6135%-101 - C1 -2DTX - ? -
81 PsiBlast_CBE 80.5532% -98 - C1 -1GEG - BUDC_KLEPN -
27 PsiBlast_CBE 78.2935% -98 - C1 -2DTE 9.8 ?
132 HHSearch 77.4434% -93 - C1 -2CFC 8.6 HCDR_XANP2
2 PsiBlast_PDB 73.7940% -98 - C1 -3GEG 7.8 ?
22 PsiBlast_CBE 73.0140% -96 - C1 -3GED 3.0 ?
1 PsiBlast_PDB 72.9040% -94 - C1 -3GED 3.1 ?
21 PsiBlast_CBE 71.9340% -96 - C1 -3GEG 9.0 ?
122 HHSearch 71.9240% -92 - C1 -3GED 3.2 ?