@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3107: (2016-02-13 )
MTQDWDAGRLDSDLEGAAFDTLAVRAGQRRTPEGEHGEALFTTSSYVFRTAADAAARFAGEVPGNVYSRYTNPTVRTFEERIAALEGAEQAVATASGMSAILALVMSLCSSGDHVLVSRSVFGSTISLFDKYFKRFGIQVDYPPLSDLAAWEAACKPNTKLFFVESPSNPLAELVDIAALAEIAHAKGALLAVDNCFCTPALQQPLKLGADVVIHSATKYIDGQGRGMGGVVAGRGEQMKEVVGFLRTAGPTLSPFNAWLFLKGLETLRIRMQAHSASALALAEWLERQPGIERVYYAGLPSHPQHELARRQQSGFGAVVSFDVKGGRDAAWRFIDATRMVSITTNLGDTKTTIAHPATTSHGRLSPEDRARAGIGDSLIRVAVGLEDLDDLKADMARGLAAL

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PPJ_A_3(1E5E)
?
[Raw transfer]



PPJ_A_3(1E5E)
?
[Raw transfer]



PLG_A_2(4HF8)
?
[Raw transfer]



PPJ_B_7(1E5E)
?
[Raw transfer]



LCS_A_2(4OMA)
?
[Raw transfer]



PLP_B_8(1E5F)
?
[Raw transfer]



PLP_A_3(1E5F)
?
[Raw transfer]



PZP_A_2(3MKJ)
?
[Raw transfer]



PLP_A_3(2CTZ)
?
[Raw transfer]



PLP_A_11(1IBJ)
METC_ARATH
[Raw transfer]



EDO_A_22(1PFF)
?
[Raw transfer]
5 PsiBlast_PDB 92.6244% -97 - C1 -3JWA - ? -
3 PsiBlast_PDB 92.4444% -99 - C1 -4HF8 4.6 ?
1 PsiBlast_PDB 92.2844%-100 - C1 -4OMA 4.3 ?
4 PsiBlast_PDB 92.0044% -98 - C1 -3JW9 - ? -
107 HHSearch 91.9544%-100 - C1 -2RFV - ? -
6 PsiBlast_PDB 91.5044% -98 - C1 -3JWB - ? -
7 PsiBlast_PDB 90.4444% -99 - C1 -2RFV - ? -
2 PsiBlast_PDB 89.5644%-102 - C1 -3MKJ 4.6 ?
9 PsiBlast_PDB 89.4544% -97 - C1 -1Y4I - ? -
41 PsiBlast_CBE 88.8842% -92 - C1 -2O7C - MEGL_PSEPU -
11 PsiBlast_PDB 88.8842% -93 - C1 -1PG8 - MEGL_PSEPU -
24 PsiBlast_CBE 88.1444% -97 - C1 -4IY7 - ? -
38 PsiBlast_CBE 88.0742% -95 - C1 -3VK2 - MEGL_PSEPU -
42 PsiBlast_CBE 87.9842% -94 - C1 -2O7C - MEGL_PSEPU -
45 PsiBlast_CBE 87.8042% -95 - C1 -1UKJ - MEGL_PSEPU -
20 PsiBlast_PDB 87.7244% -98 - C1 -4IYO - ? -
35 PsiBlast_CBE 87.6742% -95 - C1 -3VK3 - MEGL_PSEPU -
22 PsiBlast_CBE 87.6442% -93 - C1 -1PG8 - MEGL_PSEPU -
40 PsiBlast_CBE 87.5942% -93 - C1 -2O7C - MEGL_PSEPU -
25 PsiBlast_CBE 87.4344% -98 - C1 -4IY7 - ? -
105 HHSearch 85.2937%-100 - C1 -1E5E 4.4 ?
27 PsiBlast_CBE 85.0337% -96 - C1 -1E5F 3.6 ?
29 PsiBlast_CBE 84.5037% -97 - C1 -1E5E 3.8 ?
108 HHSearch 84.4540% -92 - C1 -2CTZ 3.8 ?
30 PsiBlast_CBE 84.1037% -97 - C1 -1E5E 4.4 ?
28 PsiBlast_CBE 84.0337% -96 - C1 -1E5F 3.9 ?
109 HHSearch 78.5535% -95 - C1 -1IBJ 4.0 METC_ARATH
115 HHSearch 74.5136%-107 * C1 *1PFF 2.0 ?