@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3128: (2016-02-14 )
MRNVMLITGASRGIGAATALLAAERGYAVVLNYLRNREAAEALRQRIERQGGEALAVAADVAEEGDVERLFASIDERFGRLDVLVNNAGMLEAQTRLENIDAARLHRVFATNVTGSFLCAREAVKRLSTRHGGRGGSIVNVSSMASRLGSPNEYIDYAAAKGAIDSMTIGLAREVAAEGIRVNAVRPGLIDTEIHASGGEPGRIERLKGGIPLGRGGTAEEVARAILWLASDEASYSTGTFIDVSGGR

Atome Classification :

(33 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAP_B_6(4DMM)
?
[Raw transfer]




NAP_C_8(4IQG)
?
[Raw transfer]




NAI_D_14(3AY6)
DHG4_BACME
[Raw transfer]




NAI_C_11(3AY6)
DHG4_BACME
[Raw transfer]




NAI_B_3(3AUT)
DHG4_BACME
[Raw transfer]




NAI_A_5(3AY6)
DHG4_BACME
[Raw transfer]




NAD_L_12(1GEE)
DHG_BACME
[Raw transfer]




NAD_O_15(1GCO)
DHG_BACME
[Raw transfer]




NAI_B_9(3AY6)
DHG4_BACME
[Raw transfer]




NAP_C_7(4DMM)
?
[Raw transfer]




NAD_A_5(4IIN)
?
[Raw transfer]




NAD_K_11(1RWB)
DHG_BACME
[Raw transfer]




NAD_C_10(4IIN)
?
[Raw transfer]




NAD_J_10(1GEE)
DHG_BACME
[Raw transfer]




NAD_K_11(1GEE)
DHG_BACME
[Raw transfer]




NAD_I_9(1GCO)
DHG_BACME
[Raw transfer]




NAD_M_13(1GCO)
DHG_BACME
[Raw transfer]




NAD_I_9(1GEE)
DHG_BACME
[Raw transfer]




NAD_A_5(2CFC)
HCDR_XANP2
[Raw transfer]




NAP_D_8(4DMM)
?
[Raw transfer]




NAD_K_11(1GCO)
DHG_BACME
[Raw transfer]




NAD_I_9(1RWB)
DHG_BACME
[Raw transfer]




NAD_B_7(4IIN)
?
[Raw transfer]




NAD_O_15(1RWB)
DHG_BACME
[Raw transfer]




NAD_M_13(1RWB)
DHG_BACME
[Raw transfer]




NAD_D_12(4IIN)
?
[Raw transfer]




GOL_A_4(4JIG)
?
[Raw transfer]




1 PsiBlast_PDB 94.1361% -86 - C1 -4IQG 12.8 ?
2 PsiBlast_PDB 87.4661% -92 - C1 -4JIG 2.5 ?
4 PsiBlast_PDB 80.1639% -87 - C1 -1RWB 9.1 DHG_BACME
65 PsiBlast_CBE 79.6238% -99 - C1 -4CQM - CBR4_HUMAN -
29 PsiBlast_CBE 79.4539% -87 - C1 -1GEE 9.7 DHG_BACME
7 PsiBlast_PDB 78.7939% -89 - C1 -1G6K - DHG_BACME -
23 PsiBlast_CBE 78.6939% -86 - C1 -1RWB 8.9 DHG_BACME
33 PsiBlast_CBE 78.6739% -88 - C1 -1G6K - DHG_BACME -
120 HHSearch 78.2139% -83 * C1 *1GEE - DHG_BACME -
26 PsiBlast_CBE 77.6239% -86 - C1 -1GCO 9.7 DHG_BACME
32 PsiBlast_CBE 77.5839% -89 - C1 -1G6K - DHG_BACME -
24 PsiBlast_CBE 77.4739% -86 - C1 -1RWB 9.5 DHG_BACME
3 PsiBlast_PDB 77.4641% -88 - C1 -4MOW - ? -
22 PsiBlast_CBE 77.2839% -87 - C1 -1RWB 8.5 DHG_BACME
5 PsiBlast_PDB 77.2039% -86 - C1 -1GCO 9.6 DHG_BACME
27 PsiBlast_CBE 77.1839% -86 - C1 -1GCO 9.9 DHG_BACME
6 PsiBlast_PDB 77.0839% -87 - C1 -1GEE 9.7 DHG_BACME
28 PsiBlast_CBE 76.9839% -87 - C1 -1GEE 9.9 DHG_BACME
30 PsiBlast_CBE 76.7839% -87 - C1 -1GEE 10.1 DHG_BACME
49 PsiBlast_CBE 76.7743% -90 - C1 -4DMM 11.5 ?
44 PsiBlast_CBE 76.5637% -86 - C1 -3AUT 8.2 DHG4_BACME
25 PsiBlast_CBE 76.5539% -87 - C1 -1GCO 9.7 DHG_BACME
50 PsiBlast_CBE 76.2043% -89 - C1 -4DMM 11.0 ?
48 PsiBlast_CBE 75.4143% -93 - C1 -4DMM 10.5 ?
41 PsiBlast_CBE 74.7137% -84 - C1 -3AY6 10.4 DHG4_BACME
39 PsiBlast_CBE 74.6237% -82 - C1 -3AY6 10.3 DHG4_BACME
13 PsiBlast_PDB 74.4037% -84 - C1 -3AY6 10.6 DHG4_BACME
40 PsiBlast_CBE 74.1437% -85 - C1 -3AY6 9.7 DHG4_BACME
111 HHSearch 73.3235% -79 - C1 -2CFC 7.9 HCDR_XANP2
38 PsiBlast_CBE 67.6638% -88 - C1 -4IIN 8.5 ?
37 PsiBlast_CBE 67.4638% -88 - C1 -4IIN 7.7 ?
11 PsiBlast_PDB 67.0438% -86 - C1 -4IIN 7.5 ?
36 PsiBlast_CBE 64.5438% -87 - C1 -4IIN 8.3 ?