@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3161: (2016-02-14 )
MTKSELIERIVTHQGQLSAKDVELAIKTMLEQMSQALATGDRIEIRGFGSFSLHYRAPRVGRNPKTGESVRLDGKFVPHFKPGKELRDRVNEPE

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_E_3(1IHF)
IHFB_ECOLI
[Raw transfer]
-
NACID_E_3(1IHF)
IHFB_ECOLI
[Raw transfer]
-
NACID_D_2(2HT0)
IHFB_ECOLI
[Raw transfer]
-
NACID_E_3(2IIE)

[Raw transfer]
-
NACID_E_3(2IIF)

[Raw transfer]
-
NACID_E_3(2IIE)

[Raw transfer]
-
NACID_E_3(1OUZ)
IHFB_ECOLI
[Raw transfer]
-
NACID_E_3(1OWG)
IHFB_ECOLI
[Raw transfer]
-
NACID_E_3(1OWF)
IHFB_ECOLI
[Raw transfer]
-
NACID_E_3(1OWF)
IHFB_ECOLI
[Raw transfer]
-
NACID_D_2(1P71)
DBH_NOSS1
[Raw transfer]
-
NACID_C_1(2HT0)
IHFB_ECOLI
[Raw transfer]
-
47 Fugue 87.4271% -90 - C5 -1IHF Error IHFB_ECOLI
58 HHSearch 86.3371% -91 - C5 -1OWF 4.5 IHFB_ECOLI
1 PsiBlast_PDB 85.9673% -88 - C5 -1IHF Error IHFB_ECOLI
2 PsiBlast_PDB 85.4473% -88 - C5 -1OWG 1128214396763122245304320.0 IHFB_ECOLI
3 PsiBlast_PDB 85.4273% -88 - C5 -2HT0 5.4 IHFB_ECOLI
5 PsiBlast_PDB 85.4072% -90 - C5 -1OWF 4.5 IHFB_ECOLI
4 PsiBlast_PDB 83.3172% -87 - C5 -1OUZ 1128214396763122245304320.0 IHFB_ECOLI
15 PsiBlast_PDB 73.2138% -96 - C5 -4QJN - DBH_STAAM -
10 PsiBlast_PDB 71.3243% -98 - C5 -1HUU - DBH_GEOSE -
20 PsiBlast_PDB 71.1034% -88 - C5 -2NP2 - DBH_BORBU -
9 PsiBlast_PDB 70.9543% -75 - C5 -1HUE - DBH_GEOSE -
16 PsiBlast_PDB 70.8538% -91 - C5 -4QJU - DBH_STAAM -
61 HHSearch 70.7135% -79 - C5 -2NP2 - DBH_BORBU -
21 PsiBlast_CBE 69.5038% -82 - C5 -4QJU - DBH_STAAM -
22 PsiBlast_CBE 69.2036%-101 - C5 -2O97 - DBHB_ECOLI -
28 PsiBlast_CBE 68.2135% -70 - C5 -1P71 - DBH_NOSS1 -
59 HHSearch 68.0242%-111 - C5 -1B8Z - DBH_THEMA -
34 PsiBlast_CBE 67.9835% -77 - C5 -4PT4 - DBH_MYCTO (first) -
25 PsiBlast_CBE 67.7636% -73 - C5 -1OWF - IHFA_ECOLI -
30 PsiBlast_CBE 67.6335% -77 - C5 -1P51 - DBH_NOSS1 -
57 HHSearch 66.3535% -71 - C5 -1P71 1128214396763122245304320.0 DBH_NOSS1
65 HHSearch 47.2170% -17 - C5 -2IIE 4.8
7 PsiBlast_PDB 44.4784% -12 - C5 -2IIE 4.8
6 PsiBlast_PDB 43.4484% -16 - C5 -2IIF 4.3