@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3168: (2016-02-14 )
MGELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRYTEVRMAKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLGEVIDGCLALMDNPDLTVDELMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYIRARAVVEEMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGMRVVIELRRGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQPRTLNLKDMLEVFVRHRREVVTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAVEAMVERAGADACRPEDLDPQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQEILNLIGELIRILTNPARLMEVIREELEAVKAEFGDARRTEIVASQVDLTIADLITEEDRVVTISHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFSSKGKVYWLRTFEIPEASRTARGRPLVNLLPLDEGERITAMLQIDLEALQQNGGADDDLDEAEGAVLEGEVVEAAEVEEVEGETAELVAEPTGAYIFMATAFGTVKKTPLVQFSRPRSSGLIALKLEEGDTLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIMGRNARGVRGMRLGKGQQLISMLIPESGAQILTASERGFGKRTPLSKFPRRGRGGQGVIAMVTNERNGALIAAVQVQEGEEIMLISDQGTLVRTRVDEVSLSGRNTQGVTLIKLASDEVLVGLERVQEPSGGDDEDLPEGEEAAESLGESAESESEPAAEAEGNEE

Atome Classification :

(53 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_E_5(3RAD)
PARC_STRPN
[Raw transfer]
-
SM8_B_8(2Y3P)
GYRA_ECOLI
[Raw transfer]



SM8_A_5(2Y3P)
GYRA_ECOLI
[Raw transfer]



GOL_A_4(3ILW)
GYRA_MYCTU
[Raw transfer]



GOL_B_8(3ILW)
GYRA_MYCTU
[Raw transfer]



GOL_A_4(3ILW)
GYRA_MYCTU
[Raw transfer]



NACID_H_8(3RAE)
PARC_STRPN
[Raw transfer]
-
CHAIN_H_8(4KOE)
PARC_STRPN
[Raw transfer]
-
CHAIN_H_8(4KPE)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3LTN)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3RAF)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3K9F)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3RAD)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3KSA)
PARC_STRPN
[Raw transfer]
-
CHAIN_H_8(4KPF)
PARC_STRPN
[Raw transfer]
-
MPD_A_3(3IFZ)
GYRA_MYCTU
[Raw transfer]



MPD_B_5(3IFZ)
GYRA_MYCTU
[Raw transfer]



NACID_H_6(2XCT)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(3RAE)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3RAF)
PARC_STRPN
[Raw transfer]
-
NACID_F_4(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(3K9F)
PARC_STRPN
[Raw transfer]
-
CHAIN_F_6(4KPE)
PARC_STRPN
[Raw transfer]
-
NACID_F_4(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(3FOF)
PARC_STRPN
[Raw transfer]
-
NACID_G_5(4I3H)
?
[Raw transfer]
-
NACID_G_5(2XCT)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(3FOE)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3RAD)
PARC_STRPN
[Raw transfer]
-
NACID_F_4(5BS3)
GYRA_STAAU
[Raw transfer]
-
NACID_E_3(4BUL)
GYRA_STAAN
[Raw transfer]
-
NACID_X_11(2XCT)
GYRA_STAAN
[Raw transfer]
-
CHAIN_F_6(4KOE)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3LTN)
PARC_STRPN
[Raw transfer]
-
CHAIN_F_6(4KPF)
PARC_STRPN
[Raw transfer]
-
NACID_F_4(5BS3)
GYRA_STAAU
[Raw transfer]
-
NACID_F_2(4PLB)
GYRA_STAAU
[Raw transfer]
-
NACID_F_4(2XCS)
GYRA_STAAN
[Raw transfer]
-
NACID_E_3(4BUL)
GYRA_STAAN
[Raw transfer]
-
NACID_W_8(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_F_2(4PLB)
GYRA_STAAU
[Raw transfer]
-
NACID_W_8(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_F_4(2XCS)
GYRA_STAAN
[Raw transfer]
-
NACID_E_5(3KSB)
PARC_STRPN
[Raw transfer]
-
NACID_E_5(3KSB)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3KSA)
PARC_STRPN
[Raw transfer]
-
NACID_Y_12(2XCT)
GYRA_STAAN
[Raw transfer]
-
NACID_G_5(4I3H)
?
[Raw transfer]
-
22 PsiBlast_CBE 93.1976% -96 - C3 -2Y3P 4.3 GYRA_ECOLI (first)
1 PsiBlast_PDB 92.3876% -95 - C3 -4TMA - ? -
2 PsiBlast_PDB 92.2176% -92 - C3 -2Y3P 4.6 GYRA_ECOLI (first)
21 PsiBlast_CBE 90.0876% -94 - C3 -4TMA - ? -
4 PsiBlast_PDB 89.4976% -93 - C3 -1AB4 - GYRA_ECOLI -
9 PsiBlast_PDB 84.4155% -94 - C3 -4PLB 5.4 GYRA_STAAU (first)
6 PsiBlast_PDB 84.1755% -93 - C3 -2XCS 4.8 GYRA_STAAN (first)
25 PsiBlast_CBE 83.7855% -93 - C3 -4BUL 5.0 GYRA_STAAN (first)
29 PsiBlast_CBE 83.7455% -93 - C3 -2XCS 5.5 GYRA_STAAN (first)
8 PsiBlast_PDB 83.6555% -93 - C3 -4BUL 6.2 GYRA_STAAN (first)
5 PsiBlast_PDB 83.6359% -85 - C3 -4DDQ - GYRA_BACSU -
23 PsiBlast_CBE 83.5959% -87 - C3 -4DDQ - GYRA_BACSU -
10 PsiBlast_PDB 83.5755% -93 - C3 -5BS3 5.4 GYRA_STAAU (first)
31 PsiBlast_CBE 83.5155% -95 - C3 -4PLB 6.5 GYRA_STAAU (first)
30 PsiBlast_CBE 83.1455% -92 - C3 -5BS3 6.4 GYRA_STAAU (first)
24 PsiBlast_CBE 83.1359% -83 - C3 -4DDQ - GYRA_BACSU -
28 PsiBlast_CBE 82.7655% -90 - C3 -2XCT 4.5 GYRA_STAAN (first)
26 PsiBlast_CBE 82.7555% -88 - C3 -2XCT 4.3 GYRA_STAAN (first)
34 PsiBlast_CBE 82.6655% -87 - C3 -2XCR 5.3 GYRA_STAAN (first)
33 PsiBlast_CBE 82.5555% -86 - C3 -2XCR 3.3 GYRA_STAAN (first)
32 PsiBlast_CBE 82.5055% -91 - C3 -2XCR 3.8 GYRA_STAAN (first)
11 PsiBlast_PDB 82.0255% -91 - C3 -2XCR 4.4 GYRA_STAAN (first)
7 PsiBlast_PDB 81.7555% -88 - C3 -2XCT 3.3 GYRA_STAAN (first)
27 PsiBlast_CBE 81.5955% -87 - C3 -2XCT 4.0 GYRA_STAAN (first)
42 PsiBlast_CBE 80.2542% -88 - C3 -4KOE 5.4 PARC_STRPN
37 PsiBlast_CBE 80.2541% -90 - C3 -4I3H 6.3 ?
43 PsiBlast_CBE 80.1142% -88 - C3 -4KOE 5.3 PARC_STRPN
39 PsiBlast_CBE 79.9542% -91 - C3 -4KPF 4.4 PARC_STRPN
13 PsiBlast_PDB 79.8749% -82 - C3 -3ILW 2.8 GYRA_MYCTU
45 PsiBlast_CBE 79.8342% -88 - C3 -3RAF 5.0 PARC_STRPN
35 PsiBlast_CBE 79.7449% -82 - C3 -3IFZ 3.2 GYRA_MYCTU
40 PsiBlast_CBE 79.6642% -88 - C3 -4KPE 5.3 PARC_STRPN
18 PsiBlast_PDB 79.6242% -86 - C3 -3K9F 3.7 PARC_STRPN
54 PsiBlast_CBE 79.5742% -86 - C3 -3K9F 4.9 PARC_STRPN
47 PsiBlast_CBE 79.5542% -89 - C3 -3RAE 5.2 PARC_STRPN
46 PsiBlast_CBE 79.5342% -90 - C3 -3RAE 3.6 PARC_STRPN
38 PsiBlast_CBE 79.5142% -89 - C3 -4KPF 4.8 PARC_STRPN
51 PsiBlast_CBE 79.4942% -89 - C3 -3LTN 4.7 PARC_STRPN
48 PsiBlast_CBE 79.4942% -92 - C3 -3RAD 4.3 PARC_STRPN
15 PsiBlast_PDB 79.4741% -87 - C3 -4I3H 3.9 ?
44 PsiBlast_CBE 79.4642% -89 - C3 -3RAF 5.1 PARC_STRPN
36 PsiBlast_CBE 79.3749% -81 - C3 -3ILW 2.4 GYRA_MYCTU
50 PsiBlast_CBE 79.2742% -90 - C3 -3LTN 4.4 PARC_STRPN
49 PsiBlast_CBE 79.2042% -89 - C3 -3RAD 4.3 PARC_STRPN
12 PsiBlast_PDB 79.1649% -85 - C3 -3IFZ 3.0 GYRA_MYCTU
41 PsiBlast_CBE 79.1542% -90 - C3 -4KPE 4.3 PARC_STRPN
63 HHSearch 79.0552% -83 * C3 *3ILW 2.8 GYRA_MYCTU
53 PsiBlast_CBE 78.6242% -93 - C3 -3KSA 4.6 PARC_STRPN
20 PsiBlast_PDB 78.5842% -93 - C3 -3KSB 4.3 PARC_STRPN
19 PsiBlast_PDB 78.4742% -92 - C3 -3KSA 4.8 PARC_STRPN
52 PsiBlast_CBE 78.3842% -93 - C3 -3KSB 4.6 PARC_STRPN
17 PsiBlast_PDB 70.3742% -86 - C3 -3FOF 2.7 PARC_STRPN
16 PsiBlast_PDB 69.6142% -81 - C3 -3FOE 3.4 PARC_STRPN