@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3227: (2016-02-15 )
MLKRLLIAACTLLFAGSLLAATPAAKPHVLIATSLGEIEVELDPAKAPISVKNFLEYVDSGYYDGTLFHRVIPGFMVQTGGFSAGMQEKKTRAPIKNEADNGLLNERGTLAMARTGVVDSATSQFFINLTDNDFLNHGARDFGYAVFGKVVRGMGVVDQIAKVPTTRRNGFADVPSDDVVILSAKRL

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

EDO_A_2(3S6M)
?
[Raw transfer]



GOL_D_4(2HQ6)
CWC27_HUMAN
[Raw transfer]



PEG_A_4(3S6M)
?
[Raw transfer]



ACE_C_4(1VAI)
PPIA_ECOLI
[Raw transfer]



FMT_D_4(2POE)
?
[Raw transfer]



GOL_A_4(4R3E)
CWC27_HUMAN
[Raw transfer]



CHAIN_C_3(1VAI)
PPIA_ECOLI
[Raw transfer]
-
CHAIN_B_2(3T1U)
?
[Raw transfer]
-
CHAIN_C_3(1V9T)
PPIA_ECOLI
[Raw transfer]
-
22 PsiBlast_CBE 94.9766% -95 - C8 -1V9T 5.7 PPIA_ECOLI
122 HHSearch 94.2765% -89 - C8 -1V9T - PPIA_ECOLI -
3 PsiBlast_PDB 94.0966% -92 - C8 -1V9T - PPIA_ECOLI -
21 PsiBlast_CBE 94.0166% -95 - C8 -1VAI 6.2 PPIA_ECOLI
2 PsiBlast_PDB 93.7866% -93 - C8 -1J2A - PPIA_ECOLI -
4 PsiBlast_PDB 92.7566% -89 - C8 -1VAI - PPIA_ECOLI -
117 HHSearch 89.6156% -89 - C8 -3S6M 3.0 ?
5 PsiBlast_PDB 88.9257% -96 - C8 -3S6M 2.6 ?
6 PsiBlast_PDB 88.7455% -88 - C8 -3T1U 7.4 ?
8 PsiBlast_PDB 88.0055%-100 - C8 -2RS4 - PPIB_ECOLI -
1 PsiBlast_PDB 87.4767% -86 - C8 -1CLH - PPIA_ECOLI -
7 PsiBlast_PDB 86.5155% -93 - C8 -2NUL - PPIB_ECOLI -
11 PsiBlast_PDB 74.6035%-107 - C8 -1XWN - PPIL1_HUMAN -
10 PsiBlast_PDB 74.0536%-100 - C8 -2K7N - PPIL1_HUMAN -
128 HHSearch 73.1734% -78 - C8 -1A58 - CYP1_BRUMA -
24 PsiBlast_CBE 73.1433% -88 - C8 -2OJU - PPIL3_HUMAN -
15 PsiBlast_PDB 72.8733% -87 - C8 -2OK3 - PPIL3_HUMAN -
125 HHSearch 72.8131% -80 - C8 -3BKP - ? -
17 PsiBlast_PDB 72.2034% -79 - C8 -2FU0 - ? -
16 PsiBlast_PDB 72.0133% -83 - C8 -2OJU - PPIL3_HUMAN -
116 HHSearch 69.0630% -76 - C8 -2POE 2.5 ?
13 PsiBlast_PDB 59.9239% -59 - C8 -4R3E 2.7 CWC27_HUMAN
12 PsiBlast_PDB 59.8140% -58 - C8 -2HQ6 2.6 CWC27_HUMAN