@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3228: (2016-02-15 )
MLYRRFERLIDPFRSASERMPPSEVLRFYVYFLRQVWPVFLALLVVGLIVALIEVALFSYLGRIVDLAQSTPSAEFFRVHANELIWMAVVALVLRPLFNALHDMLVHQSINPSMTNLIRWQNHRYVLKQSLGFFQNDFAGRIAQRIMQTGNSLRDSAVQVVDALWHVLIYTVSALVLFAEADWRLMIPLVLWVFAYVGALAYFVPQVKRRSVEASDSRSKLMGRIVDGYTNITTLKLFAHTRQEEDYAREAIGDQTLKSQRAGRVVTSMDVTITVMNGVLITGTTGLALWLWSQELISVGAIALATGLVIRINNMSGWIMWVVGGIFENIGQVQDGMQTIALPRKVVDREDAQPLRVERGEVEFEHIAFHYGKGSGVIQGLDLKVRPGEKIGLVGPSGAGKSTLVNLLLRLYDLESGRILVDGQDIAGVTQESLRAQIGMVTQDTSLLHRSIRDNLLYGRPGASDAELMEAVRKARADEFIPLLSDAEGRRGFDAHVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEVESAIQESLETLMQGKTVIAIAHRLSTIARMDRLVVLDKGHIAESGTHAELLAHGGLYARLWQHQTGGFVGVD

Atome Classification :

(66 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_B_7(2ONJ)
Y1866_STAAM
[Raw transfer]




ANP_A_8(2ONJ)
Y1866_STAAM
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_C_11(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_H_8(2FGJ)

[Raw transfer]




ATP_C_9(1MV5)
LMRA_LACLA
[Raw transfer]




ADP_A_5(2HYD)
Y1866_STAAM
[Raw transfer]




ATP_A_2(4K8O)

[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ADP_A_3(3NHA)

[Raw transfer]




ADP_A_2(3NHB)

[Raw transfer]




ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_J_5(4YMU)
?
[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




ATP_D_5(3VX4)
?
[Raw transfer]




ATP_D_12(1XEF)

[Raw transfer]




ATP_A_3(2IXE)
TAP1_RAT
[Raw transfer]




ANP_A_3(4Q4A)
?
[Raw transfer]




ATP_D_6(2IXE)

[Raw transfer]




ADP_A_2(5DGX)
?
[Raw transfer]




ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_J_5(4YMV)
?
[Raw transfer]




ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]




ADP_B_2(2FFA)

[Raw transfer]




ADP_B_2(2FFB)

[Raw transfer]




ADP_B_6(2HYD)
Y1866_STAAM
[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




12D_A_2(3B5J)

[Raw transfer]




ATP_A_7(4YMU)
?
[Raw transfer]




ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_A_2(2IXG)

[Raw transfer]




ATP_A_3(3VX4)
?
[Raw transfer]




ATP_A_3(3VX4)
?
[Raw transfer]




ATP_D_15(2IXF)

[Raw transfer]




ATP_B_8(2IXF)
TAP1_RAT
[Raw transfer]




ATP_C_12(2IXF)
TAP1_RAT
[Raw transfer]




ATP_A_6(4YMV)
?
[Raw transfer]




ATP_A_2(3NH9)

[Raw transfer]




ATP_A_5(2IXF)
TAP1_RAT
[Raw transfer]




ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ADP_B_8(1MV5)
LMRA_LACLA
[Raw transfer]




ADP_A_3(1JJ7)

[Raw transfer]




ADP_D_10(1MV5)

[Raw transfer]




ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ADP_A_2(4U00)
?
[Raw transfer]




ATP_D_6(2IXE)
TAP1_RAT
[Raw transfer]




25 PsiBlast_CBE 84.8731%-108 - C3 -3WMF - ? -
24 PsiBlast_CBE 83.4031%-105 - C3 -3WMG - ? -
1 PsiBlast_PDB 78.8931% -97 - C3 -2HYD 4.8 Y1866_STAAM
22 PsiBlast_CBE 78.7631% -96 - C3 -2HYD 4.6 Y1866_STAAM
21 PsiBlast_CBE 76.8131% -95 - C3 -2ONJ 6.6 Y1866_STAAM
2 PsiBlast_PDB 76.7531% -95 - C3 -2ONJ 5.9 Y1866_STAAM
11 PsiBlast_PDB 73.0133%-100 - C3 -4Q4H - Y288_THEMA -
9 PsiBlast_PDB 72.3033%-105 - C3 -3QF4 - Y288_THEMA -
104 HHSearch 72.1227%-103 - C3 -3WMG - ? -
103 HHSearch 72.0027%-106 - C3 -3ZDQ - ABCBA_HUMAN -
10 PsiBlast_PDB 71.9933%-103 - C3 -4Q4A - Y288_THEMA -
20 PsiBlast_PDB 71.9430% -99 - C3 -3B60 - MSBA_SALTY -
12 PsiBlast_PDB 71.2132%-104 - C3 -4Q4J - Y288_THEMA -
101 HHSearch 66.3226%-104 * C3 *3B60 - MSBA_SALTY -
7 PsiBlast_PDB 64.8538%-100 - C3 -4MRS - ATM1_NOVAD -
8 PsiBlast_PDB 64.7438%-101 - C3 -4MRV - ATM1_NOVAD -
4 PsiBlast_PDB 64.4938%-101 - C3 -4MRN - ATM1_NOVAD -
3 PsiBlast_PDB 64.4331% -94 - C3 -4A82 - Y1866_STAAM -
5 PsiBlast_PDB 64.2838% -99 - C3 -4MRP - ATM1_NOVAD -
122 Fugue 64.1126%-100 - C3 -3B60 - MSBA_SALTY -
14 PsiBlast_PDB 62.4048% -98 - C3 -3NH9 6.1
49 PsiBlast_CBE 61.3446%-107 - C3 -1XEF 7.3 HLYBP_ECOLX
42 PsiBlast_CBE 61.3346%-109 - C3 -2FGJ 7.1
33 PsiBlast_CBE 61.0046%-108 - C3 -2FGK 7.5 HLYBP_ECOLX
48 PsiBlast_CBE 60.9646%-110 - C3 -1XEF 7.1 HLYBP_ECOLX
114 HHSearch 60.8647%-106 - C3 -2FF7 6.4
43 PsiBlast_CBE 60.8346%-106 - C3 -2FGJ 6.9 HLYBP_ECOLX
50 PsiBlast_CBE 60.5146%-104 - C3 -1XEF 6.5 HLYBP_ECOLX
15 PsiBlast_PDB 59.9648% -98 - C3 -3NHA 6.5
31 PsiBlast_CBE 59.9346%-108 - C3 -2FGK 7.2
27 PsiBlast_CBE 59.8847%-104 - C3 -2FF7 6.5
16 PsiBlast_PDB 59.7348%-100 - C3 -3NHB 6.7
32 PsiBlast_CBE 59.6446%-103 - C3 -2FGK 6.8 HLYBP_ECOLX
30 PsiBlast_CBE 59.5947%-108 - C3 -2PMK 6.9
47 PsiBlast_CBE 59.4446%-104 - C3 -1XEF 7.1
34 PsiBlast_CBE 59.0946%-102 - C3 -2FGK 7.6 HLYBP_ECOLX
44 PsiBlast_CBE 58.3346%-104 - C3 -2FGJ 7.5 HLYBP_ECOLX
35 PsiBlast_CBE 58.2646%-103 - C3 -2FFB 6.3
40 PsiBlast_CBE 58.2146%-103 - C3 -3B5J 6.7
46 PsiBlast_CBE 58.1046%-102 - C3 -2FFA 6.6
45 PsiBlast_CBE 57.8346%-101 - C3 -2FGJ 7.0 HLYBP_ECOLX
110 HHSearch 55.5636% -95 - C3 -2IXE 3.5 TAP1_RAT
109 HHSearch 54.8944%-108 - C3 -1MV5 6.4 LMRA_LACLA
55 PsiBlast_CBE 54.6637% -94 - C3 -4Q4A 5.8 ?
57 PsiBlast_CBE 53.1638%-101 - C3 -3VX4 6.6 ?
26 PsiBlast_CBE 52.9144%-109 - C3 -5DGX 6.6 ?
69 PsiBlast_CBE 52.1937% -93 - C3 -2IXE 7.0 TAP1_RAT
58 PsiBlast_CBE 51.9738% -99 - C3 -3VX4 6.9 ?
54 PsiBlast_CBE 51.7343%-105 - C3 -1MV5 6.4 LMRA_LACLA
53 PsiBlast_CBE 51.6243% -98 - C3 -1MV5 6.1 LMRA_LACLA
64 PsiBlast_CBE 51.4438% -95 - C3 -2IXF 7.2 TAP1_RAT
108 HHSearch 50.3234% -96 - C3 -3VX4 6.9 ?
68 PsiBlast_CBE 50.2537%-100 - C3 -2IXE 6.7
66 PsiBlast_CBE 50.2338% -94 - C3 -2IXF 7.0 TAP1_RAT
65 PsiBlast_CBE 50.1838% -95 - C3 -2IXF 7.2 TAP1_RAT
63 PsiBlast_CBE 49.8938% -94 - C3 -2IXF 7.3
52 PsiBlast_CBE 49.8043%-101 - C3 -1MV5 5.3 LMRA_LACLA
70 PsiBlast_CBE 49.4537% -95 - C3 -4K8O 6.4
71 PsiBlast_CBE 48.7036% -96 - C3 -2IXG 6.5
51 PsiBlast_CBE 48.3343%-102 - C3 -1MV5 4.8
67 PsiBlast_CBE 48.3038% -87 - C3 -1JJ7 6.0
76 PsiBlast_CBE 39.6833% -85 - C3 -4U00 4.6 ?
88 PsiBlast_CBE 37.5933% -86 - C3 -4YMU 4.9 ?
87 PsiBlast_CBE 37.2933% -83 - C3 -4YMU 5.3 ?
85 PsiBlast_CBE 37.1033% -83 - C3 -4YMV 4.9 ?
86 PsiBlast_CBE 36.5433% -82 - C3 -4YMV 4.1 ?