@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3341: (2016-02-16 )
MAQTDKHYFGTLLAQTSRAWRAELDRRLSHLGLSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADIEAIAASVRNDVLTGIDESEQALCQQVLLRILANLENR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SAL_A_5(3DEU)
SLYA_SALTY
[Raw transfer]




SAL_A_5(3DEU)
SLYA_SALTY
[Raw transfer]




SAL_B_8(3DEU)
SLYA_SALTY
[Raw transfer]




NACID_C_3(4AIK)
SLYA_YERPY
[Raw transfer]

-

NACID_C_3(4AIJ)
SLYA_YERPY
[Raw transfer]

-

NACID_C_3(3Q5F)
SLYA_SALTY
[Raw transfer]

-

NACID_C_3(4AIJ)
SLYA_YERPY
[Raw transfer]

-

NACID_D_4(3Q5F)
SLYA_SALTY
[Raw transfer]

-

NACID_D_4(3Q5F)
SLYA_SALTY
[Raw transfer]

-

51 Fugue 99.33100%-162 - C1 -2FBH - ? -
1 PsiBlast_PDB 99.33100%-162 - C1 -2FBH - ? -
31 HHSearch 98.97100%-162 - C1 -2FBH - ? -
5 PsiBlast_PDB 74.4636%-152 - C1 -4AIH - SLYA_YERPY -
56 Fugue 73.0821%-134 - C1 -1LJ9 - ? -
4 PsiBlast_PDB 71.5240%-163 - C1 -3QPT - SLYA_SALTY -
7 PsiBlast_PDB 70.7136%-141 - C1 -4AIK 6.1 SLYA_YERPY
6 PsiBlast_PDB 70.5636%-146 - C1 -4AIJ 5.4 SLYA_YERPY
23 PsiBlast_CBE 70.3436%-140 - C1 -4AIK - SLYA_YERPY -
24 PsiBlast_CBE 70.2036%-134 - C1 -4AIJ 4.2 SLYA_YERPY
45 HHSearch 69.3228%-132 - C1 -3CJN - ? -
2 PsiBlast_PDB 68.9540%-147 - C1 -3DEU 2.8 SLYA_SALTY
3 PsiBlast_PDB 68.5840%-134 - C1 -3Q5F 6.0 SLYA_SALTY
22 PsiBlast_CBE 68.5240%-134 - C1 -3Q5F 6.0 SLYA_SALTY
16 PsiBlast_PDB 68.0125%-137 - C1 -4L9J - ? -
21 PsiBlast_CBE 67.8840%-156 - C1 -3DEU 2.7 SLYA_SALTY
36 HHSearch 67.5737%-142 - C1 -3DEU 2.8 SLYA_SALTY
42 HHSearch 67.3130%-132 * C1 *2GXG - ? -
17 PsiBlast_PDB 66.7430%-139 - C1 -3CJN - ? -
14 PsiBlast_PDB 64.7825%-132 - C1 -4L9N - ? -