@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3397: (2016-02-16 )
MSNLYTERVLSVHHWNDTLFSFKTTRNPGLRFKTGQFVMIGLEVDGRPLMRAYSIASPNYEEHLEFFSIKVPDGPLTSRLQHLKEGDELMVSRKPTGTLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETYERYEKVILVHGVRWVSELAYADFITKVLPEHEYFGDQVKEKLIYYPLVTREPFRNQGRQTDLMRSGKLFEDIGLPPMNPQDDRAMICGSPSMLEETSAVLDSFGLKISPRMGEPGDYLIERAFVEK

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_A_3(2QDX)
?
[Raw transfer]



FAD_A_3(2QDX)
?
[Raw transfer]



FAD_A_3(3CRZ)
?
[Raw transfer]



FAD_A_2(4B4D)
?
[Raw transfer]



FAD_A_5(2VNK)
?
[Raw transfer]



FAD_A_2(2VNH)
?
[Raw transfer]



FAD_C_9(2VNK)
?
[Raw transfer]



FAD_B_4(4FK8)
?
[Raw transfer]



FAD_A_3(4FK8)
?
[Raw transfer]



FAD_D_11(2VNK)
?
[Raw transfer]



FAD_A_5(2BGJ)
?
[Raw transfer]



FAD_A_2(2VNJ)
?
[Raw transfer]



FAD_B_7(2VNK)
?
[Raw transfer]



FAD_B_5(4K1X)
?
[Raw transfer]



FAD_C_7(2BGJ)
?
[Raw transfer]



FAD_A_3(2BGI)
?
[Raw transfer]



FAD_A_3(2BGI)
?
[Raw transfer]



FAD_A_2(2VNI)
?
[Raw transfer]



FAD_D_8(2BGJ)
?
[Raw transfer]



FAD_B_6(2BGJ)
?
[Raw transfer]



FAD_B_2(1A8P)
FENR_AZOVI
[Raw transfer]



FAD_B_2(1FDR)
FENR_ECOLI
[Raw transfer]



FAD_B_2(1FDR)
FENR_ECOLI
[Raw transfer]



FAD_B_5(3FPK)
?
[Raw transfer]



FAD_A_3(3FPK)
?
[Raw transfer]



CO2_A_7(2BGI)
?
[Raw transfer]



A2P_A_3(2VNI)
?
[Raw transfer]



GOL_B_11(2EIX)
?
[Raw transfer]



TRS_B_15(2XNJ)
FENR_ECOLI
[Raw transfer]
2 PsiBlast_PDB 99.52100%-115 - C4 -3CRZ 13.3 ?
1 PsiBlast_PDB 99.36100%-112 - C4 -2QDX 13.7 ?
45 HHSearch 99.06100%-113 - C4 -2QDX 13.7 ?
3 PsiBlast_PDB 95.0485%-115 - C4 -1A8P 11.2 FENR_AZOVI
4 PsiBlast_PDB 86.2762%-114 - C4 -4B4D 13.8 ?
5 PsiBlast_PDB 85.3262%-116 - C4 -4F7D - ? -
21 PsiBlast_CBE 84.8362%-114 - C4 -4FK8 12.4 ?
6 PsiBlast_PDB 84.3462%-105 - C4 -4FK8 12.4 ?
47 HHSearch 82.3454%-105 - C4 -2BGI 12.3 ?
7 PsiBlast_PDB 81.7553%-104 - C4 -2BGI 12.6 ?
22 PsiBlast_CBE 81.6853%-109 - C4 -2VNK 12.5 ?
25 PsiBlast_CBE 81.5453%-109 - C4 -2BGJ 12.2 ?
24 PsiBlast_CBE 81.3853%-108 - C4 -2VNK 12.5 ?
8 PsiBlast_PDB 80.9453%-108 - C4 -2BGJ 12.9 ?
27 PsiBlast_CBE 80.9253%-108 - C4 -2BGJ 12.4 ?
23 PsiBlast_CBE 80.7353%-106 - C4 -2VNK 12.5 ?
28 PsiBlast_CBE 80.5253%-104 - C4 -4K1X 11.1 ?
12 PsiBlast_PDB 80.4053%-105 - C4 -2VNK 12.7 ?
26 PsiBlast_CBE 80.3553%-106 - C4 -2BGJ 12.6 ?
11 PsiBlast_PDB 80.2553%-105 - C4 -2VNJ 12.2 ?
9 PsiBlast_PDB 80.1953%-103 - C4 -2VNH 12.3 ?
10 PsiBlast_PDB 80.0953%-101 - C4 -2VNI 12.0 ?
46 HHSearch 69.4334%-105 - C4 -1FDR 7.7 FENR_ECOLI
13 PsiBlast_PDB 67.7236%-112 - C4 -1FDR 9.0 FENR_ECOLI
14 PsiBlast_PDB 66.8235%-108 - C4 -3FPK 8.4 ?
29 PsiBlast_CBE 66.5135%-108 - C4 -3FPK 7.7 ?
30 PsiBlast_CBE 66.3733%-106 - C4 -2XNJ 3.4 FENR_ECOLI