@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3466: (2016-02-17 )
MPRSPLFSQFPLHERLLKALESLSFSEPTPVQAAAIPKALEGHDLRVTAQTGSGKTAAFLLPLLHRLLAEDKPRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGARLRKNPEIIIGTPGRLLEQRNAGNLPLQDIEVLVLDEADRMLDMGFADDVLALANACPAERQTLLFSATHSGAGLNKVIAEVLREPQVLRLNQVGELNENVRQQVITADDVAHKEQLLQWLLSNETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDRKLAIERLKQGAVKILVATDVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHGDWNLMSSVERYLKQNFERRNIKELKAAYQGPKKLKASGKAAGSKKKKQDRKGAAAKPAAKRKPAARPKAGPSAVVSADGMAPLKRKKPTAE

Atome Classification :

(66 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

8OD_B_7(3NBF)
?
[Raw transfer]




ANP_A_3(4D25)
?
[Raw transfer]




ANP_A_3(3G0H)
DD19B_HUMAN
[Raw transfer]




ANP_A_7(3FHT)
DD19B_HUMAN
[Raw transfer]




ANP_A_7(3FHT)
DD19B_HUMAN
[Raw transfer]




ANP_B_12(3FHT)
DD19B_HUMAN
[Raw transfer]




ANP_A_3(3I5Y)
MS116_YEAST
[Raw transfer]




ADP_A_3(3I61)
MS116_YEAST
[Raw transfer]




ADP_A_3(4D26)
?
[Raw transfer]




ANP_A_3(3I5X)
MS116_YEAST
[Raw transfer]




ANP_A_3(3I5X)
MS116_YEAST
[Raw transfer]




ANP_A_3(3SQW)
MS116_YEAST
[Raw transfer]




ANP_A_3(3SQW)
MS116_YEAST
[Raw transfer]




ANP_A_3(3SQX)
MS116_YEAST
[Raw transfer]




ANP_A_7(2J0S)
IF4A3_HUMAN
[Raw transfer]




ADP_A_3(3I62)
MS116_YEAST
[Raw transfer]




8OP_C_10(3NBF)
?
[Raw transfer]




ADP_A_3(3PEY)
DBP5_YEAST
[Raw transfer]




ADP_A_3(3PEW)
DBP5_YEAST
[Raw transfer]




ADP_A_3(3PEY)
DBP5_YEAST
[Raw transfer]




ADP_B_5(4PX9)
DDX3X_HUMAN
[Raw transfer]




ANP_B_4(3B7G)
DDX20_HUMAN
[Raw transfer]




ADP_A_4(3FE2)
DDX5_HUMAN
[Raw transfer]




ADP_A_4(4PX9)
DDX3X_HUMAN
[Raw transfer]




ANP_A_3(3B7G)
DDX20_HUMAN
[Raw transfer]




AMP_A_2(2I4I)
DDX3X_HUMAN
[Raw transfer]




ADP_C_6(4PX9)
DDX3X_HUMAN
[Raw transfer]




AMP_A_3(3BER)
DDX47_HUMAN
[Raw transfer]




AMP_A_8(2GXS)
?
[Raw transfer]




AMP_A_2(2I4I)
DDX3X_HUMAN
[Raw transfer]




ADP_A_3(3RRN)
DBP5_YEAST
[Raw transfer]




8OX_B_6(3MWL)
?
[Raw transfer]




8OP_B_6(3MWK)
?
[Raw transfer]




ADP_A_3(3DKP)
DDX52_HUMAN
[Raw transfer]




ADP_B_8(3FE2)
DDX5_HUMAN
[Raw transfer]




ADP_A_3(2PL3)
DDX10_HUMAN
[Raw transfer]




AMP_A_2(2GXQ)
?
[Raw transfer]




ADP_A_2(4PXA)
DDX3X_HUMAN
[Raw transfer]




ADP_B_4(2OXC)
DDX20_HUMAN
[Raw transfer]




ADP_B_4(3FMO)
DD19B_HUMAN
[Raw transfer]




ADP_A_3(2OXC)
DDX20_HUMAN
[Raw transfer]




8OD_A_5(3NBF)
?
[Raw transfer]




8OP_D_12(3NBF)
?
[Raw transfer]




AMP_A_3(4KBF)
?
[Raw transfer]




AMP_B_9(2GXS)
?
[Raw transfer]




ADP_A_3(3EWS)
DD19B_HUMAN
[Raw transfer]




AMP_A_5(2VSX)
IF4A_YEAST
[Raw transfer]




AMP_B_6(2VSO)
IF4A_YEAST
[Raw transfer]




AMP_B_6(2VSX)
IF4A_YEAST
[Raw transfer]




AMP_A_5(2VSO)
IF4A_YEAST
[Raw transfer]




FLC_D_4(1T6N)
DX39B_HUMAN
[Raw transfer]




FLC_C_3(1T6N)
DX39B_HUMAN
[Raw transfer]




1PE_A_4(4BRW)
DHH1_YEAST
[Raw transfer]




IPA_D_4(1XTI)
DX39B_HUMAN
[Raw transfer]




IPA_D_4(1XTI)
DX39B_HUMAN
[Raw transfer]




107 HHSearch 90.6336% -95 - C8 -2DB3 - VASA1_DROME -
115 HHSearch 90.2537%-110 - C8 -2I4I 4.3 DDX3X_HUMAN
21 PsiBlast_CBE 89.6237% -97 - C8 -2DB3 - VASA1_DROME -
1 PsiBlast_PDB 89.5337% -96 - C8 -2DB3 - VASA1_DROME -
22 PsiBlast_CBE 89.4437% -97 - C8 -2DB3 - VASA1_DROME -
23 PsiBlast_CBE 89.0337% -96 - C8 -2DB3 - VASA1_DROME -
2 PsiBlast_PDB 88.7337%-110 - C8 -2I4I 4.3 DDX3X_HUMAN
3 PsiBlast_PDB 87.9437% -94 - C8 -4PXA 4.7 DDX3X_HUMAN
4 PsiBlast_PDB 87.1636%-107 - C8 -1HV8 - H669_METJA -
5 PsiBlast_PDB 87.0134% -93 - C8 -4D25 8.2 ?
34 PsiBlast_CBE 86.8133%-113 - C8 -3EWS 6.5 DD19B_HUMAN
39 PsiBlast_CBE 86.3731%-105 - C8 -4CT4 - DDX6_HUMAN -
24 PsiBlast_CBE 86.0339% -98 - C8 -4KBG - ? -
15 PsiBlast_PDB 85.9033%-105 - C8 -3PEY 8.1 DBP5_YEAST
6 PsiBlast_PDB 85.7434% -92 - C8 -4D26 4.8 ?
12 PsiBlast_PDB 85.5633%-105 - C8 -3PEW 8.1 DBP5_YEAST
25 PsiBlast_CBE 85.4239%-104 - C8 -4KBF - ? -
118 HHSearch 85.1335%-104 - C8 -1HV8 - H669_METJA -
20 PsiBlast_PDB 84.8032% -92 - C8 -2J0S 9.5 IF4A3_HUMAN
17 PsiBlast_PDB 84.7832% -91 - C8 -2HYI - IF4A3_HUMAN -
14 PsiBlast_PDB 84.4233%-108 - C8 -3RRN 4.6 DBP5_YEAST
11 PsiBlast_PDB 84.4233%-106 - C8 -4BRW 2.4 DHH1_YEAST
114 HHSearch 84.2332% -90 - C8 -3I5X 9.6 MS116_YEAST
7 PsiBlast_PDB 84.2239% -94 - C8 -4KBF 5.2 ?
45 PsiBlast_CBE 84.1131%-104 - C8 -1XTI 3.9 DX39B_HUMAN
41 PsiBlast_CBE 84.0233%-117 - C8 -2VSX 4.9 IF4A_YEAST
40 PsiBlast_CBE 84.0033%-117 - C8 -2VSX 4.4 IF4A_YEAST
119 HHSearch 83.7132% -89 - C8 -3SQW 9.4 MS116_YEAST
33 PsiBlast_CBE 83.6733% -97 - C8 -3G0H 7.8 DD19B_HUMAN
43 PsiBlast_CBE 83.6333%-118 - C8 -2VSO 5.0 IF4A_YEAST
42 PsiBlast_CBE 83.6133%-118 - C8 -2VSO 5.3 IF4A_YEAST
35 PsiBlast_CBE 83.4233%-101 - C8 -3FHT 9.2 DD19B_HUMAN
36 PsiBlast_CBE 83.1033% -99 - C8 -3FHT 8.5 DD19B_HUMAN
50 PsiBlast_CBE 82.1331% -86 - C8 -3I5X 9.6 MS116_YEAST
47 PsiBlast_CBE 81.9131% -85 - C8 -3I62 7.6 MS116_YEAST
116 HHSearch 81.8934% -97 - C8 -3PEY 7.9 DBP5_YEAST
48 PsiBlast_CBE 81.7731% -86 - C8 -3I61 7.8 MS116_YEAST
51 PsiBlast_CBE 81.7331% -84 - C8 -3SQX 9.5 MS116_YEAST
111 HHSearch 81.4733% -95 - C8 -3FHT 8.7 DD19B_HUMAN
49 PsiBlast_CBE 81.4031% -84 - C8 -3I5Y 8.8 MS116_YEAST
46 PsiBlast_CBE 81.3731% -85 - C8 -3SQW 9.4 MS116_YEAST
113 HHSearch 80.8831%-105 - C8 -1XTI 3.9 DX39B_HUMAN
53 PsiBlast_CBE 68.5646%-119 - C8 -2GXS 4.9 ?
69 PsiBlast_CBE 68.4141%-116 - C8 -3BER 5.1 DDX47_HUMAN
60 PsiBlast_CBE 68.3746%-121 - C8 -3MWL 3.7 ?
54 PsiBlast_CBE 68.2346%-114 - C8 -2GXS 6.0 ?
59 PsiBlast_CBE 68.0846%-110 - C8 -3NBF 4.0 ?
55 PsiBlast_CBE 68.0446%-118 - C8 -2GXQ 6.1 ?
57 PsiBlast_CBE 67.9746%-119 - C8 -3NBF 4.6 ?
62 PsiBlast_CBE 67.9346%-116 - C8 -3MWK 4.2 ?
68 PsiBlast_CBE 67.5443%-114 - C8 -2PL3 6.0 DDX10_HUMAN
56 PsiBlast_CBE 67.2146%-119 - C8 -3NBF 3.5 ?
58 PsiBlast_CBE 66.9946%-109 - C8 -3NBF 5.2 ?
95 PsiBlast_CBE 66.0632%-113 - C8 -2OXC 7.2 DDX20_HUMAN
72 PsiBlast_CBE 65.7938%-116 - C8 -4PX9 5.7 DDX3X_HUMAN
77 PsiBlast_CBE 65.7837%-110 - C8 -1T6N 2.9 DX39B_HUMAN
92 PsiBlast_CBE 65.5932%-116 - C8 -3B7G 5.0 DDX20_HUMAN
71 PsiBlast_CBE 65.5738%-116 - C8 -4PX9 4.8 DDX3X_HUMAN
70 PsiBlast_CBE 65.1438%-116 - C8 -4PX9 5.7 DDX3X_HUMAN
94 PsiBlast_CBE 65.0432%-114 - C8 -2OXC 6.4 DDX20_HUMAN
93 PsiBlast_CBE 65.0432%-112 - C8 -3B7G 4.7 DDX20_HUMAN
78 PsiBlast_CBE 64.7737%-106 - C8 -1T6N 2.5 DX39B_HUMAN
91 PsiBlast_CBE 64.5233%-115 - C8 -3FMO 6.8 DD19B_HUMAN
76 PsiBlast_CBE 63.6139% -97 - C8 -3FE2 5.3 DDX5_HUMAN
75 PsiBlast_CBE 62.9839% -98 - C8 -3FE2 6.2 DDX5_HUMAN
86 PsiBlast_CBE 59.4533%-110 - C8 -3DKP 6.1 DDX52_HUMAN