@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3514: (2016-02-17 )
MRATSLSILTSEHSLPVAAPADSRLEIEFRGVAKHFPGRGKSAATLAVQGLDLAIRRGEVVSIIGPSGCGKSTLLNMGAGLYAPSEGEVRVGGERVSGPVRKVSFMLQKDLLMPWRSIRRNIELGLEIDGRAAGERRAIAEEMLEKCHLAGFAEHYPFQLSGGMRQRAALARTLATDPQVLFLDEPFSALDAQTKMILQQDLARMLCEQRKTALFITHDLVEAIAMSDRILVMSARPGTIVEEIEVGLPLRDNPLERRKLPEIGPLVGRLMTLLKVGESAELH

Atome Classification :

(35 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]



ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]



ATP_H_8(2FGK)

[Raw transfer]



ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]



ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]



ATP_A_3(3FVQ)
FBPC_NEIG1
[Raw transfer]



ATP_H_8(2FGJ)

[Raw transfer]



128_A_2(2PMK)

[Raw transfer]



ANP_J_5(3C41)
?
[Raw transfer]



ADP_B_2(2FF7)

[Raw transfer]



AGS_B_6(3C4J)
?
[Raw transfer]



ADP_A_5(2OLJ)
?
[Raw transfer]



ANP_K_6(3C41)
?
[Raw transfer]



AGS_A_4(3C4J)
?
[Raw transfer]



ADP_B_6(2Q0H)
?
[Raw transfer]



ADP_A_2(4U00)
?
[Raw transfer]



ADP_A_5(2Q0H)
?
[Raw transfer]



ADP_A_5(2OLJ)
?
[Raw transfer]



ADP_B_6(2OLJ)
?
[Raw transfer]



AT4_D_8(2OLK)
?
[Raw transfer]



AT4_B_6(2OLK)
?
[Raw transfer]



AT4_C_7(2OLK)
?
[Raw transfer]



AT4_A_5(2OLK)
?
[Raw transfer]
105 Fugue 88.0935% -87 - C1 -1Z47 - ? -
111 HHSearch 79.4239% -98 - C1 -1Z47 - ? -
22 PsiBlast_CBE 78.0934%-106 - C1 -2IT1 - ? -
21 PsiBlast_CBE 77.2939% -96 - C1 -1Z47 - ? -
2 PsiBlast_PDB 77.0934%-103 - C1 -2IT1 - ? -
1 PsiBlast_PDB 76.4139% -96 - C1 -1Z47 - ? -
118 HHSearch 72.7833%-106 - C1 -3RLF - MALK_ECOLI -
107 Fugue 72.7130% -82 - C1 -1OXS - ? -
114 HHSearch 72.6034%-113 - C1 -1V43 - ? -
63 PsiBlast_CBE 72.4436% -98 - C1 -3C4J 4.7 ?
115 HHSearch 71.6538%-103 - C1 -3FVQ 7.0 FBPC_NEIG1
67 PsiBlast_CBE 71.5936% -95 - C1 -2OUK - ? -
130 HHSearch 71.5431% -97 - C1 -1B0U 6.0 HISP_SALTY
64 PsiBlast_CBE 71.1536% -93 - C1 -3C4J 6.2 ?
71 PsiBlast_CBE 71.1136% -93 - C1 -2OLK 5.5 ?
127 HHSearch 71.0633% -95 - C1 -2PCJ - LOLD_AQUAE -
78 PsiBlast_CBE 71.0636% -95 - C1 -3C41 5.7 ?
65 PsiBlast_CBE 70.9636%-100 - C1 -2Q0H 5.0 ?
112 HHSearch 70.8836%-103 - C1 -2IT1 - ? -
66 PsiBlast_CBE 70.8136% -93 - C1 -2Q0H 4.5 ?
72 PsiBlast_CBE 70.6836% -95 - C1 -2OLK 5.3 ?
77 PsiBlast_CBE 70.3736% -96 - C1 -3C41 4.8 ?
76 PsiBlast_CBE 69.7936% -96 - C1 -2OLJ 5.1 ?
73 PsiBlast_CBE 69.7336% -94 - C1 -2OLK 5.4 ?
129 HHSearch 69.7233% -97 - C1 -2OLJ 6.2 ?
75 PsiBlast_CBE 69.2836% -94 - C1 -2OLJ 5.0 ?
74 PsiBlast_CBE 69.1936% -96 - C1 -2OLK 5.0 ?
83 PsiBlast_CBE 60.6136%-103 - C1 -4U00 4.3 ?
86 PsiBlast_CBE 57.5432%-100 - C1 -2FF7 6.1
99 PsiBlast_CBE 57.2531%-104 - C1 -2FGK 5.7 HLYBP_ECOLX
97 PsiBlast_CBE 56.9931%-102 - C1 -2FGK 6.0
88 PsiBlast_CBE 55.7932%-101 - C1 -2PMK 5.7
103 PsiBlast_CBE 55.4831%-107 - C1 -2FGJ 5.8
98 PsiBlast_CBE 55.3931%-101 - C1 -2FGK 6.0 HLYBP_ECOLX
100 PsiBlast_CBE 54.9131% -98 - C1 -2FGK 6.4 HLYBP_ECOLX