@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3537: (2016-02-18 )
MSVRHFLSFMDYSPEELIGLIRRGSELKDLRNRGVLYEPLKSRVLGMVFEKASTRTRLSFEAGMIQLGGQAIFLSPRDTQLGRGEPIGDSARVMSRMLDGVMIRTFAHATLTEFAAHSKVPVINGLSDDLHPCQLLADMQTFHEHRGSIQGKTVAWIGDGNNMCNSYIEAALKFDFQLRVACPEGYEPKAEFVALAGDRLRVVRDPREAVAGAHLVSTDVWASMGQEDEAAARIALFRPYQVNAALLDGAADDVLFMHCLPAHRGEEISEELLDDPRSVAWDQAENRLHAQKALLELLIEHAHYA

Atome Classification :

(44 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PSQ_D_4(1DUV)
OTC1_ECOLI
[Raw transfer]



PSQ_E_5(1DUV)
OTC1_ECOLI
[Raw transfer]



PSQ_F_6(1DUV)
OTC1_ECOLI
[Raw transfer]



PAO_D_4(1OTH)
OTC_HUMAN
[Raw transfer]



PAO_D_4(1OTH)
OTC_HUMAN
[Raw transfer]



CIR_B_11(4JQO)
OTC_VIBVU
[Raw transfer]



CIR_A_5(4JQO)
OTC_VIBVU
[Raw transfer]



PUW_B_9(4A8H)
PTC_ENTFA
[Raw transfer]



PAO_A_2(4A8T)
PTC_ENTFA
[Raw transfer]



CIR_C_16(4JQO)
OTC_VIBVU
[Raw transfer]



PUW_A_3(4A8H)
PTC_ENTFA
[Raw transfer]



CP_C_13(2I6U)
OTC_MYCTU
[Raw transfer]



CP_A_4(4JFR)
OTC_VIBVU
[Raw transfer]



CP_G_7(1C9Y)
OTC_HUMAN
[Raw transfer]



CP_A_5(4H31)
OTC_VIBVU
[Raw transfer]



CP_B_10(4NF2)
OTC_BACAN
[Raw transfer]



CP_A_4(4NF2)
OTC_BACAN
[Raw transfer]



CP_D_4(1EP9)
OTC_HUMAN
[Raw transfer]



CP_B_6(4JFR)
OTC_VIBVU
[Raw transfer]



CP_A_9(2I6U)
OTC_MYCTU
[Raw transfer]



CP_B_11(2I6U)
OTC_MYCTU
[Raw transfer]



CP_C_12(4NF2)
OTC_BACAN
[Raw transfer]



CP_J_10(1FVO)
OTC_HUMAN
[Raw transfer]



CP_G_7(1FVO)
OTC_HUMAN
[Raw transfer]



PAL_C_8(1F1B)
PYRB_ECOLI
[Raw transfer]



PAL_A_7(1F1B)
PYRB_ECOLI
[Raw transfer]



ARG_A_6(4JHX)
OTC_VIBVU
[Raw transfer]



NVA_A_10(2I6U)
OTC_MYCTU
[Raw transfer]



PE5_B_26(4H31)
OTC_VIBVU
[Raw transfer]
2 PsiBlast_PDB 96.3648% -99 - C9 -4OH7 - ? -
1 PsiBlast_PDB 95.8053%-103 - C9 -4F2G - ? -
4 PsiBlast_PDB 95.3247% -92 - C9 -1A1S - OTC_PYRFU -
3 PsiBlast_PDB 95.2647% -96 - C9 -1PVV - OTC_PYRFU -
21 PsiBlast_CBE 94.8248% -99 - C9 -4OH7 - ? -
103 HHSearch 94.7647% -95 - C9 -1PVV - OTC_PYRFU -
5 PsiBlast_PDB 93.2946%-103 - C9 -4NF2 4.9 OTC_BACAN
22 PsiBlast_CBE 93.1746%-101 - C9 -4NF2 4.9 OTC_BACAN
23 PsiBlast_CBE 93.0446%-101 - C9 -4NF2 4.9 OTC_BACAN
107 HHSearch 91.1743% -95 - C9 -3TPF - OTC_CAMJE -
28 PsiBlast_CBE 91.0344% -99 - C9 -2I6U 4.2 OTC_MYCTU
25 PsiBlast_CBE 90.9244%-100 - C9 -2P2G - OTC_MYCTU -
63 PsiBlast_CBE 90.8736% -97 - C9 -4A8P - PTC_ENTFA -
58 PsiBlast_CBE 90.7436% -97 - C9 -4A8T 6.0 PTC_ENTFA
82 PsiBlast_CBE 90.5836% -99 - C9 -4AM8 - PTC_ENTFA -
24 PsiBlast_CBE 90.5644%-100 - C9 -2P2G - OTC_MYCTU -
81 PsiBlast_CBE 90.5236% -95 - C9 -4AM8 - PTC_ENTFA -
26 PsiBlast_CBE 90.4844%-100 - C9 -2P2G - OTC_MYCTU -
64 PsiBlast_CBE 90.4336% -96 - C9 -4A8P - PTC_ENTFA -
112 HHSearch 90.3940% -95 - C9 -1DXH - OTCC_PSEAE -
65 PsiBlast_CBE 90.2936% -96 - C9 -4A8H 6.4 PTC_ENTFA
8 PsiBlast_PDB 90.2444% -95 - C9 -2I6U 2.7 OTC_MYCTU
29 PsiBlast_CBE 89.9644% -95 - C9 -2I6U 4.4 OTC_MYCTU
106 HHSearch 89.7945% -91 - C9 -2I6U 4.3 OTC_MYCTU
66 PsiBlast_CBE 89.6936% -93 - C9 -4A8H 6.4 PTC_ENTFA
14 PsiBlast_PDB 89.4241% -92 - C9 -1FVO 3.8 OTC_HUMAN
33 PsiBlast_CBE 89.3837% -95 - C9 -4JQO 3.6 OTC_VIBVU
30 PsiBlast_CBE 89.2641% -95 - C9 -1FVO 4.0 OTC_HUMAN
39 PsiBlast_CBE 89.1437% -94 - C9 -4JFR 4.4 OTC_VIBVU
34 PsiBlast_CBE 89.0537% -94 - C9 -4JQO 3.7 OTC_VIBVU
108 HHSearch 89.0040% -92 - C9 -1OTH 7.4 OTC_HUMAN
41 PsiBlast_CBE 88.9837% -92 - C9 -4H31 2.9 OTC_VIBVU
20 PsiBlast_PDB 88.9637% -91 - C9 -4JHX 2.8 OTC_VIBVU
18 PsiBlast_PDB 88.7437% -93 - C9 -4H31 5.2 OTC_VIBVU
13 PsiBlast_PDB 88.7141% -94 - C9 -1EP9 4.8 OTC_HUMAN
12 PsiBlast_PDB 88.6941% -93 - C9 -1C9Y 4.7 OTC_HUMAN
11 PsiBlast_PDB 88.3441% -92 - C9 -1OTH 7.4 OTC_HUMAN
35 PsiBlast_CBE 88.3137% -94 - C9 -4JQO 3.6 OTC_VIBVU
19 PsiBlast_PDB 87.7737% -95 - C9 -4JFR 4.7 OTC_VIBVU
53 PsiBlast_CBE 87.7137% -92 - C9 -1DUV 6.9 OTC1_ECOLI
51 PsiBlast_CBE 86.8437% -92 - C9 -1DUV 6.8 OTC1_ECOLI
52 PsiBlast_CBE 86.0037% -94 - C9 -1DUV 6.8 OTC1_ECOLI
91 PsiBlast_CBE 59.8834% -90 - C9 -1F1B 2.9 PYRB_ECOLI
92 PsiBlast_CBE 58.6934% -91 - C9 -1F1B 3.3 PYRB_ECOLI