@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3538: (2016-02-18 )
MSHDLLLNLKDLACGYASQKVVQDLDLHLNAGDIGCLLGPSGCGKTTTLRAIAGFEPVLAGQIELGGEVISRPGFTLAPEKRRIGMVFQDYALFPHLSVADNVGFGIRKHPQRERLVRELLELVKLDHLAARHPHELSGGQQQRVALARALAPEPLLLLLDEPFSNLDVELRRSLSQEVREILKARGTSAILVTHDQEEAFAVCDHIGVFKEGHLEQWDTPYNLYHEPLTPFVASFVGQGYFIRGQLLSPDTVQTELGVIRGNRAYSLPSGSAVDVLLRPDDLVHAPQGELKARIVGKTFLGAATLYRLQLPTGTQLESIFPSHADHQPGDDVGIRVAADHLVVFAARGSVAAHLAPVQA

Atome Classification :

(43 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_J_5(4YMU)
?
[Raw transfer]



ATP_A_6(4YMV)
?
[Raw transfer]



AGS_B_6(3C4J)
?
[Raw transfer]



ATP_A_4(4P33)
LPTB_ECOLI
[Raw transfer]



ANP_K_6(3C41)
?
[Raw transfer]



ATP_B_5(4QC2)
?
[Raw transfer]



ATP_A_3(4QC2)
?
[Raw transfer]



ANP_J_5(3C41)
?
[Raw transfer]



ATP_A_7(4YMU)
?
[Raw transfer]



ATP_J_5(4YMV)
?
[Raw transfer]



ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]



ADP_A_5(2Q0H)
?
[Raw transfer]



AGS_A_4(3C4J)
?
[Raw transfer]



ADP_A_3(4P32)
LPTB_ECOLI
[Raw transfer]



ADP_B_6(2Q0H)
?
[Raw transfer]



ADP_B_6(2OLJ)
?
[Raw transfer]



ADP_B_5(4P32)
LPTB_ECOLI
[Raw transfer]



AT4_A_5(2OLK)
?
[Raw transfer]



ADP_A_5(2OLJ)
?
[Raw transfer]



AT4_D_8(2OLK)
?
[Raw transfer]



AT4_C_7(2OLK)
?
[Raw transfer]



AT4_B_6(2OLK)
?
[Raw transfer]



GOL_A_5(4P33)
LPTB_ECOLI
[Raw transfer]
116 HHSearch 90.4334%-113 - C1 -3RLF - MALK_ECOLI -
117 HHSearch 88.3139%-109 - C1 -1Z47 - ? -
103 Fugue 87.9338%-111 - C1 -1Z47 - ? -
4 PsiBlast_PDB 87.5735%-117 - C1 -1V43 - ? -
38 PsiBlast_CBE 87.4334%-114 - C1 -1OXV - ? -
114 HHSearch 86.5833%-111 - C1 -2YYZ - ? -
37 PsiBlast_CBE 86.2834%-112 - C1 -1OXV - ? -
41 PsiBlast_CBE 86.1634%-112 - C1 -1OXU - ? -
39 PsiBlast_CBE 85.7334%-110 - C1 -1OXV - ? -
111 HHSearch 85.6233%-118 - C1 -1V43 - ? -
43 PsiBlast_CBE 85.5434%-108 - C1 -1OXS - ? -
5 PsiBlast_PDB 85.1935%-113 - C1 -1VCI - ? -
42 PsiBlast_CBE 85.1234%-112 - C1 -1OXU - ? -
40 PsiBlast_CBE 84.2234%-112 - C1 -1OXU - ? -
46 PsiBlast_CBE 83.9533%-110 - C1 -1OXX - ? -
28 PsiBlast_CBE 83.8134%-113 - C1 -3PUZ - MALK_ECOLI -
1 PsiBlast_PDB 83.4339%-107 - C1 -1Z47 - ? -
110 HHSearch 83.3132%-110 - C1 -2IT1 - ? -
18 PsiBlast_PDB 82.8634%-109 - C1 -3PUV - MALK_ECOLI -
22 PsiBlast_CBE 82.5534%-106 - C1 -2IT1 - ? -
88 PsiBlast_CBE 61.9736%-115 - C1 -4P32 6.5 LPTB_ECOLI
89 PsiBlast_CBE 61.6536%-114 - C1 -4P32 6.1 LPTB_ECOLI
66 PsiBlast_CBE 61.2031%-104 - C1 -4YMV 5.6 ?
65 PsiBlast_CBE 60.1331%-104 - C1 -4YMV 6.7 ?
68 PsiBlast_CBE 60.0231%-104 - C1 -4YMU 5.9 ?
94 PsiBlast_CBE 60.0033%-104 - C1 -1B0U 6.1 HISP_SALTY
90 PsiBlast_CBE 59.8735%-109 - C1 -4P33 2.6 LPTB_ECOLI
86 PsiBlast_CBE 59.6436%-107 - C1 -4QC2 7.6 ?
67 PsiBlast_CBE 59.4231%-103 - C1 -4YMU 6.2 ?
87 PsiBlast_CBE 59.3536%-105 - C1 -4QC2 7.2 ?
91 PsiBlast_CBE 58.8635%-108 - C1 -4P33 7.3 LPTB_ECOLI
49 PsiBlast_CBE 58.0532%-102 - C1 -3C4J 5.6 ?
59 PsiBlast_CBE 56.5132%-101 - C1 -2OLK 6.7 ?
57 PsiBlast_CBE 56.4132%-100 - C1 -2OLK 6.7 ?
62 PsiBlast_CBE 56.3332%-101 - C1 -2OLJ 6.0 ?
58 PsiBlast_CBE 55.7932%-100 - C1 -2OLK 6.6 ?
60 PsiBlast_CBE 55.5232%-100 - C1 -2OLK 6.3 ?
51 PsiBlast_CBE 54.7232%-100 - C1 -2Q0H 6.1 ?
61 PsiBlast_CBE 53.9032% -96 - C1 -2OLJ 6.2 ?
63 PsiBlast_CBE 53.8532%-100 - C1 -3C41 6.4 ?
50 PsiBlast_CBE 53.7132% -98 - C1 -3C4J 6.7 ?
64 PsiBlast_CBE 52.4132% -97 - C1 -3C41 7.2 ?
52 PsiBlast_CBE 50.8432% -93 - C1 -2Q0H 5.9 ?