@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3568: (2016-02-18 )
MTYLQQHARSIAEPAAFWAEQARSLAWYQAPANILESLPDGTHRWFADGRLNSAYLALDRQIEEGRGEQTALIYDSPVTGTQDRYSYLRLRDEVARLAGALRALGVGKGDRVIIYMPMVPQAAMAMLACARLGAVHSVVFGGFAPYELALRIDDATPKLVLTASCGLEFDRVIEYKPLVDKALELAIHQPAHVMVWQRPQAPARLHPGRDLDWQDCLAAAEPADPLPVASGDPLYIMYTSGTTGKPKGIVRDNGGHAVAVRYAVRTIYGMQAGDVWWGISDVGWVVGHSLIVYGPLMCGCTTVFYEGKPVRTPDAGAYWRVIEEHRVNSLFCAPTAIRAIRKEDPHGERVKRYDLGSLRHLFLAGEKLDSSTQHWLEEHTGRPVHDHWWQTETGWPVTAPCIGIAGHDLRAGSTNRAVPGYHVQVLDDEGRPLGANRQGAIVIALPLPPGCAQTLWGDHPRYLQAYLGNYPGYYHTGDGGYLDEDGFVYIMGRTDDVINVSGHRLSTGEMEERVAQHQAVAECAVIGVRDELKGHVPLGLVVLKDDAGIAAEQLQRELVALVREQIGALACFQRVVVVKRLPKTRSGKILRAVLRKIADGEDYAAPSTIDDPTILGEIEAALRVRKAG

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PRX_C_3(2P2M)
ACSA_SALTY
[Raw transfer]



PRX_E_5(2P2B)
ACSA_SALTY
[Raw transfer]



ATP_A_7(3C5E)
ACS2A_HUMAN
[Raw transfer]



APC_A_7(3DAY)
ACS2A_HUMAN
[Raw transfer]



PRX_D_4(2P2M)
ACSA_SALTY
[Raw transfer]



PRX_A_3(2P20)
ACSA_SALTY
[Raw transfer]



PRX_B_4(2P20)
ACSA_SALTY
[Raw transfer]



AMP_G_7(2P2F)
ACSA_SALTY
[Raw transfer]



AMP_H_8(2P2F)
ACSA_SALTY
[Raw transfer]



PRX_C_3(2P2Q)
ACSA_SALTY
[Raw transfer]



AMP_D_4(1RY2)
ACS1_YEAST
[Raw transfer]



PRX_D_4(2P2Q)
ACSA_SALTY
[Raw transfer]



AMP_D_4(1RY2)
ACS1_YEAST
[Raw transfer]



COA_D_4(2P2J)
ACSA_SALTY
[Raw transfer]



COA_C_3(2P2J)
ACSA_SALTY
[Raw transfer]



COA_A_7(1PG4)
ACSA_SALTY
[Raw transfer]



COA_A_7(1PG4)
ACSA_SALTY
[Raw transfer]



COA_A_7(1PG4)
ACSA_SALTY
[Raw transfer]



COA_E_5(2P2F)
ACSA_SALTY
[Raw transfer]



COA_D_4(2P2B)
ACSA_SALTY
[Raw transfer]



COA_B_8(1PG4)
ACSA_SALTY
[Raw transfer]



COA_F_6(2P2F)
ACSA_SALTY
[Raw transfer]



COA_B_6(1PG3)
ACSA_SALTY
[Raw transfer]



COA_A_5(1PG3)
ACSA_SALTY
[Raw transfer]
5 PsiBlast_PDB 98.5341%-100 - C3 -2P20 7.9 ACSA_SALTY
7 PsiBlast_PDB 98.4141%-101 - C3 -1PG3 6.3 ACSA_SALTY
24 PsiBlast_CBE 98.3341% -99 - C3 -2P2J 4.1 ACSA_SALTY
22 PsiBlast_CBE 98.2641% -98 - C3 -2P2F 6.5 ACSA_SALTY
23 PsiBlast_CBE 98.1741% -98 - C3 -2P2Q 7.2 ACSA_SALTY
25 PsiBlast_CBE 98.1541% -99 - C3 -2P2M 7.4 ACSA_SALTY
6 PsiBlast_PDB 98.1441% -99 - C3 -2P2M 7.8 ACSA_SALTY
28 PsiBlast_CBE 98.1341% -96 - C3 -1PG3 5.8 ACSA_SALTY
1 PsiBlast_PDB 98.1041% -97 - C3 -2P2B 8.3 ACSA_SALTY
21 PsiBlast_CBE 97.9541% -98 - C3 -2P2B 6.3 ACSA_SALTY
26 PsiBlast_CBE 97.9041% -99 - C3 -2P20 7.3 ACSA_SALTY
2 PsiBlast_PDB 97.8641%-100 - C3 -2P2F 5.8 ACSA_SALTY
27 PsiBlast_CBE 97.7941% -97 - C3 -1PG4 6.3 ACSA_SALTY
3 PsiBlast_PDB 97.7441% -98 - C3 -2P2Q 7.6 ACSA_SALTY
53 Fugue 97.7141%-100 - C3 -1PG4 5.2 ACSA_SALTY
8 PsiBlast_PDB 97.5741% -99 - C3 -1PG4 5.2 ACSA_SALTY
4 PsiBlast_PDB 97.3241% -99 - C3 -2P2J 6.2 ACSA_SALTY
29 HHSearch 96.5141%-100 - C3 -1PG4 5.2 ACSA_SALTY
30 HHSearch 91.5938% -99 * C3 *1RY2 5.1 ACS1_YEAST
9 PsiBlast_PDB 90.7336% -99 - C3 -1RY2 5.1 ACS1_YEAST