@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3579: (2016-02-18 )
MSHYLLAIDQGTTSSRAIVFSAQGLPVASCQQEFKQYFPKDGWVEHDGEEIWLTTLQVCRDALARKGLRAADIAAIGITNQRETTLVWDAASGDLIHPAIVWQDRRTADYCAELKAAGHEANVSARTGLLIDPYFSATKLRWILDNVPGARQRAERGELRFGTVDCFLLWRLTGGRSHRTDATNASRTLLFNIHSQDWDEELLALFEIPRSLLPEVLDCAAEFGVSEPSLLGAAIPVLGMAGDQQAALIGQACFQPGMVKSTYGTGCFMIQNTGEQPVTSKNRLLTTVGYRLDGKVSYAVEGSIFVAGAAVQWLRDGIKLIDHAHESEALAIQAGDSNGVYLVPAFTGLGAPYWDPKARGAIFGLTRDTGIKEIVTAGLQSVCYQTRDLLEAMRQDGTPPSALRVDGGMVVNNWMMQFLTDILGVTVERPEVTETTALGVAYMAGLKAGFYRDLDDIASHWHLQRRFAAHMAEERRGELYAGWQNAVRRVRSEA

Atome Classification :

(41 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATS_Y_4(1GLJ)
GLPK_ECOLI
[Raw transfer]




ADP_G_6(1GLC)
GLPK_ECOLI
[Raw transfer]




ADP_G_6(1GLE)
GLPK_ECOLI
[Raw transfer]




ADP_G_5(1GLD)
GLPK_ECOLI
[Raw transfer]




ATF_Y_5(1BWF)
GLPK_ECOLI
[Raw transfer]




ATS_O_5(1GLJ)
GLPK_ECOLI
[Raw transfer]




ACP_Y_5(1GLL)
GLPK_ECOLI
[Raw transfer]




ACP_O_6(1GLL)
GLPK_ECOLI
[Raw transfer]




GOL_O_3(3D7E)
GLPK_ENTCA
[Raw transfer]




GOL_I_9(1BOT)
GLPK_ECOLI
[Raw transfer]




GOL_O_7(3H46)
GLPK_ENTCA
[Raw transfer]




GOL_Z_5(1BO5)
GLPK_ECOLI
[Raw transfer]




GOL_O_8(3H3N)
GLPK_ENTCA
[Raw transfer]




GOL_O_4(1BO5)
GLPK_ECOLI
[Raw transfer]




ATF_O_6(1BWF)
GLPK_ECOLI
[Raw transfer]




GOL_G_9(1GLA)
GLPK_ECOLI
[Raw transfer]




GOL_O_3(3FLC)
GLPK_ENTCA
[Raw transfer]




GOL_G_7(1BOT)
GLPK_ECOLI
[Raw transfer]




GOL_C_3(1XUP)
GLPK_ENTCA
[Raw transfer]




EDO_A_5(2W41)
?
[Raw transfer]




EDO_B_21(2W41)
?
[Raw transfer]




MPD_C_3(2D4W)
?
[Raw transfer]




MPD_C_3(2D4W)
?
[Raw transfer]




MPD_D_4(2D4W)
?
[Raw transfer]




EDO_A_9(2W41)
?
[Raw transfer]




EDO_B_25(2W41)
?
[Raw transfer]




1 PsiBlast_PDB 97.7660%-106 - C3 -4E1J - GLPK_RHIME -
83 HHSearch 97.3355% -97 - C3 -3G25 - GLPK_STAAC -
82 HHSearch 96.3155% -94 - C3 -3EZW - GLPK_ECOLI -
27 PsiBlast_CBE 96.1455% -95 - C3 -3EZW - GLPK_ECOLI -
48 PsiBlast_CBE 95.8053% -97 - C3 -3H3N 3.5 GLPK_ENTCA
26 PsiBlast_CBE 95.7655% -98 - C3 -3EZW - GLPK_ECOLI -
40 PsiBlast_CBE 95.6653% -98 - C3 -3H46 3.6 GLPK_ENTCA
43 PsiBlast_CBE 95.6053%-100 - C3 -3H45 - GLPK_ENTCA -
39 PsiBlast_CBE 95.5853% -97 - C3 -3D7E - GLPK_ENTCA -
17 PsiBlast_PDB 95.5753% -97 - C3 -3D7E 3.6 GLPK_ENTCA
32 PsiBlast_CBE 95.4855% -96 - C3 -3EZW - GLPK_ECOLI -
2 PsiBlast_PDB 95.4854% -98 - C3 -3G25 - GLPK_STAAC -
34 PsiBlast_CBE 95.4255% -93 - C3 -1BU6 - GLPK_ECOLI -
41 PsiBlast_CBE 95.3853% -96 - C3 -3H45 - GLPK_ENTCA -
47 PsiBlast_CBE 95.3353% -98 - C3 -3H3O - GLPK_ENTCA -
33 PsiBlast_CBE 95.3355% -94 - C3 -1BU6 - GLPK_ECOLI -
29 PsiBlast_CBE 95.2355% -95 - C3 -3EZW - GLPK_ECOLI -
80 HHSearch 95.2254%-100 - C3 -2ZF5 - GLPK_THEKO -
12 PsiBlast_PDB 95.1355% -92 - C3 -3EZW - GLPK_ECOLI -
45 PsiBlast_CBE 95.0653% -97 - C3 -3H3O - GLPK_ENTCA -
38 PsiBlast_CBE 94.9655% -97 - C3 -1BWF 5.7 GLPK_ECOLI
50 PsiBlast_CBE 94.8853% -96 - C3 -3FLC 3.5 GLPK_ENTCA
25 PsiBlast_CBE 94.7355% -92 - C3 -1BO5 2.7 GLPK_ECOLI
11 PsiBlast_PDB 94.6555% -91 - C3 -1BO5 4.1 GLPK_ECOLI
24 PsiBlast_CBE 94.5155% -93 - C3 -1BOT 4.6 GLPK_ECOLI
6 PsiBlast_PDB 94.2655% -93 - C3 -1GLC 5.5 GLPK_ECOLI
4 PsiBlast_PDB 94.2155% -91 - C3 -1GLA 2.4 GLPK_ECOLI
14 PsiBlast_PDB 94.1755% -92 - C3 -1BWF 5.7 GLPK_ECOLI
8 PsiBlast_PDB 94.1255% -91 - C3 -1GLE 5.4 GLPK_ECOLI
10 PsiBlast_PDB 94.0955% -92 - C3 -1BOT 4.1 GLPK_ECOLI
37 PsiBlast_CBE 93.9055% -96 - C3 -1GLJ 6.4 GLPK_ECOLI
36 PsiBlast_CBE 93.9055% -97 - C3 -1GLL 5.3 GLPK_ECOLI
15 PsiBlast_PDB 93.7455% -94 - C3 -1GLJ 6.4 GLPK_ECOLI
16 PsiBlast_PDB 93.6555% -92 - C3 -1GLL 6.1 GLPK_ECOLI
7 PsiBlast_PDB 93.6055% -91 - C3 -1GLD 5.9 GLPK_ECOLI
88 HHSearch 91.6348% -95 - C3 -2D4W 3.9 ?
54 PsiBlast_CBE 91.2247% -96 - C3 -2D4W 3.9 ?
53 PsiBlast_CBE 90.8347% -96 - C3 -2D4W 3.2 ?
71 PsiBlast_CBE 86.6636%-100 - C3 -2W41 2.9 ?
72 PsiBlast_CBE 86.6336%-100 - C3 -2W41 3.1 ?
52 PsiBlast_CBE 86.3053% -80 - C3 -1XUP 2.5 GLPK_ENTCA