@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3582: (2016-02-18 )
MTDKHNKKYVVALDQGTTSSRAIVFDRDANVVSQAQREFAQFYPQAGWVEHDPMEIWATQSSTLVEALAQASIEHDQVAAIGITNQRETTVVWDRHSGRPIHNAIVWQCRRSAAICAQLKRDGLEDYIRETTGLVTDPYFSGTKLKWILDNVEGARERARNGDLLFGTIDTWLIWKLTEGKVHVTDYTNASRTMLFNIHSRDWDARMLEVLDIPRSMLPEVRNSSEVYGNARIGGVGGGELPIAGIAGDQQAALFGQMCVEPGQAKNTYGTGCFLLMHTGDKAVKSTHGLLTTIACGPRGEVGYALEGAVFNGGSTVQWLRDELKVINDSFDSEYFATKVKDSNGVYLVPAFTGLGAPYWDPYARGAVFGLTRGVKADHLIRATLESIAYQTRDVLDAMQRDAGERLRALRVDGGAVANNFLMQFQADILGTRVERPVMRETTALGAAYLAGLACGFWSSLDELKSKAVIERVFEPECDEPRREKLYAGWKKAVERTRGWDDGEL

Atome Classification :

(36 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATF_Y_5(1BWF)
GLPK_ECOLI
[Raw transfer]




ACP_Y_5(1GLL)
GLPK_ECOLI
[Raw transfer]




ATS_O_5(1GLJ)
GLPK_ECOLI
[Raw transfer]




ADP_G_6(1GLE)
GLPK_ECOLI
[Raw transfer]




ATS_Y_4(1GLJ)
GLPK_ECOLI
[Raw transfer]




ADP_G_6(1GLC)
GLPK_ECOLI
[Raw transfer]




ATF_O_6(1BWF)
GLPK_ECOLI
[Raw transfer]




ADP_G_5(1GLD)
GLPK_ECOLI
[Raw transfer]




ACP_O_6(1GLL)
GLPK_ECOLI
[Raw transfer]




GOL_G_9(1GLA)
GLPK_ECOLI
[Raw transfer]




GOL_Z_5(1BO5)
GLPK_ECOLI
[Raw transfer]




GOL_I_9(1BOT)
GLPK_ECOLI
[Raw transfer]




GOL_O_4(1BO5)
GLPK_ECOLI
[Raw transfer]




GOL_O_7(3H46)
GLPK_ENTCA
[Raw transfer]




GOL_O_3(3FLC)
GLPK_ENTCA
[Raw transfer]




GOL_O_3(3D7E)
GLPK_ENTCA
[Raw transfer]




GOL_G_7(1BOT)
GLPK_ECOLI
[Raw transfer]




GOL_O_8(3H3N)
GLPK_ENTCA
[Raw transfer]




GOL_C_3(1XUP)
GLPK_ENTCA
[Raw transfer]




EDO_B_21(2W41)
?
[Raw transfer]




EDO_A_5(2W41)
?
[Raw transfer]




MPD_C_3(2D4W)
?
[Raw transfer]




MPD_C_3(2D4W)
?
[Raw transfer]




MPD_D_4(2D4W)
?
[Raw transfer]




EDO_A_9(2W41)
?
[Raw transfer]




EDO_B_25(2W41)
?
[Raw transfer]




30 PsiBlast_CBE 99.0276% -91 - C4 -3EZW - GLPK_ECOLI -
8 PsiBlast_PDB 98.9077% -86 - C4 -1BO5 4.1 GLPK_ECOLI
10 PsiBlast_PDB 98.5876% -89 - C4 -3EZW - GLPK_ECOLI -
73 HHSearch 98.4176% -89 - C4 -3EZW - GLPK_ECOLI -
28 PsiBlast_CBE 98.1976% -88 - C4 -1BU6 - GLPK_ECOLI -
9 PsiBlast_PDB 98.1976% -88 - C4 -1BU6 - GLPK_ECOLI -
22 PsiBlast_CBE 98.0577% -87 - C4 -1GLF - GLPK_ECOLI -
25 PsiBlast_CBE 97.8977% -88 - C4 -1BO5 2.7 GLPK_ECOLI
6 PsiBlast_PDB 97.8577% -88 - C4 -1GLF - GLPK_ECOLI -
27 PsiBlast_CBE 97.6776% -89 - C4 -1BU6 - GLPK_ECOLI -
26 PsiBlast_CBE 97.6276% -90 - C4 -1BU6 - GLPK_ECOLI -
29 PsiBlast_CBE 97.4376% -94 - C4 -3EZW - GLPK_ECOLI -
1 PsiBlast_PDB 97.4177% -88 - C4 -1GLA 2.4 GLPK_ECOLI
21 PsiBlast_CBE 97.2777% -85 - C4 -1GLF - GLPK_ECOLI -
12 PsiBlast_PDB 97.1676% -88 - C4 -1GLJ 6.4 GLPK_ECOLI
3 PsiBlast_PDB 97.1177% -87 - C4 -1GLC 5.4 GLPK_ECOLI
24 PsiBlast_CBE 97.0677% -89 - C4 -1BOT 4.6 GLPK_ECOLI
7 PsiBlast_PDB 96.7077% -86 - C4 -1BOT 4.1 GLPK_ECOLI
11 PsiBlast_PDB 96.6476% -87 - C4 -1BWF 5.9 GLPK_ECOLI
32 PsiBlast_CBE 96.5976% -90 - C4 -3EZW - GLPK_ECOLI -
37 PsiBlast_CBE 96.4276% -90 - C4 -1BWF 5.5 GLPK_ECOLI
5 PsiBlast_PDB 96.4077% -88 - C4 -1GLE 5.3 GLPK_ECOLI
4 PsiBlast_PDB 96.2777% -88 - C4 -1GLD 5.3 GLPK_ECOLI
36 PsiBlast_CBE 96.2176% -91 - C4 -1GLJ 7.0 GLPK_ECOLI
35 PsiBlast_CBE 95.6576% -90 - C4 -1GLL 5.2 GLPK_ECOLI
13 PsiBlast_PDB 95.2076% -88 - C4 -1GLL 4.8 GLPK_ECOLI
47 PsiBlast_CBE 92.9659% -84 - C4 -3H3N 3.5 GLPK_ENTCA
39 PsiBlast_CBE 92.9359% -85 - C4 -3H46 3.6 GLPK_ENTCA
49 PsiBlast_CBE 92.7059% -82 - C4 -3FLC 3.5 GLPK_ENTCA
16 PsiBlast_PDB 91.8359% -85 - C4 -3D7E 3.6 GLPK_ENTCA
53 PsiBlast_CBE 88.6354% -83 - C4 -2D4W 3.9 ?
81 HHSearch 88.3653% -83 - C4 -2D4W 3.9 ?
52 PsiBlast_CBE 87.7354% -81 - C4 -2D4W 3.2 ?
51 PsiBlast_CBE 83.6259% -69 - C4 -1XUP 2.5 GLPK_ENTCA
71 PsiBlast_CBE 82.4438% -85 - C4 -2W41 3.1 ?
70 PsiBlast_CBE 81.9238% -85 - C4 -2W41 3.0 ?