@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3588: (2016-02-18 )
MNNNKKCAFFLLPILAGDSVPALAEGFLEDSRASLALRNFYMNRDFRDGAGRAKSEEWAQGFLFDYRSGYTEGTLGVGLDLLGKLGVRLDSGAGRSGTGLLPLRDDGSAAGDYARLDATAKLRLSRSELKVGGLVPKLPTIQPNYGRLFPQVFQGALLTSGELSGLSLNLGRLTEVSQRNEAGTSDLALFNRNRRFAGAAQADRFDLAGLDYRIAPDWTGSYHYGELEQVYAQHFLGLKGRIGIAADSLESDLRLALSRDTGGARGGRIDNRSFSGSLTYRLRNGQAFGLGYQRMSGDHGFPYLEGTDPYLVNFGQYNDFAEAGESSWQLRYDCDFAPLGVPGLSLMTRYFSGHGAKPKGADGSREWERDSDLRYVLQGGALKGLGLVWRNATYRSAFSRDIDENRLYLTYELPLF

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

C8E_B_4(3SZD)
?
[Raw transfer]



C8E_A_3(4FSP)
?
[Raw transfer]



C8E_B_5(3SZD)
?
[Raw transfer]



C8E_B_9(4FRX)
?
[Raw transfer]



C8E_B_24(2Y2X)
?
[Raw transfer]



C8E_A_10(2ODJ)
PORD_PSEAE
[Raw transfer]



C8E_B_24(3SYS)
?
[Raw transfer]



C8E_B_23(2QTK)
?
[Raw transfer]



C8E_B_9(4FMS)
?
[Raw transfer]



C8E_A_8(2Y0H)
?
[Raw transfer]



C8E_A_9(2Y0K)
?
[Raw transfer]



C8E_A_6(2Y2X)
?
[Raw transfer]



C8E_A_7(2QTK)
?
[Raw transfer]



C8E_B_5(3SZD)
?
[Raw transfer]



C8E_A_16(3SYS)
?
[Raw transfer]



C8E_A_16(2Y2X)
?
[Raw transfer]



C8E_A_9(3SZV)
?
[Raw transfer]



C8E_B_9(4FMS)
?
[Raw transfer]



C8E_A_13(3T24)
?
[Raw transfer]
1 PsiBlast_PDB 98.1199% -42 - C10 -4FSP 2.3 ?
2 PsiBlast_PDB 86.5958% -38 - C10 -2Y0L - ? -
3 PsiBlast_PDB 86.2258% -40 - C10 -3T20 - ? -
35 HHSearch 86.2157% -34 - C10 -2Y0L - ? -
24 PsiBlast_CBE 85.9143% -27 - C10 -2Y2X 3.6 ?
6 PsiBlast_PDB 85.7849% -26 - C10 -4FT6 - ? -
11 PsiBlast_PDB 85.7243% -33 - C10 -4FRX - ? -
22 PsiBlast_CBE 85.6951% -39 - C10 -3T24 - ? -
23 PsiBlast_CBE 85.6243% -29 - C10 -4FRX 2.5 ?
26 PsiBlast_CBE 85.5643% -29 - C10 -3SYS 3.6 ?
17 PsiBlast_PDB 85.1139% -22 - C10 -3JTY - ? -
4 PsiBlast_PDB 85.0951% -34 - C10 -3T24 - ? -
5 PsiBlast_PDB 84.6353% -30 - C10 -4FRT - ? -
40 HHSearch 84.2048% -27 - C10 -3T24 1.6 ?
16 PsiBlast_PDB 83.8042% -26 - C10 -4FMS 3.8 ?
29 PsiBlast_CBE 83.6939% -23 - C10 -3JTY - ? -
15 PsiBlast_PDB 83.5042% -24 - C10 -3SZD 2.0 ?
12 PsiBlast_PDB 83.1643% -25 - C10 -2QTK 2.6 ?
14 PsiBlast_PDB 82.9643% -31 - C10 -3SYS 3.5 ?
13 PsiBlast_PDB 82.9443% -31 - C10 -2Y2X 3.3 ?
33 HHSearch 82.9343% -32 - C10 -2Y2X 2.9 ?
25 PsiBlast_CBE 82.8743% -26 - C10 -2QTK 2.4 ?
39 HHSearch 82.5747% -37 - C10 -2Y0H 2.8 ?
27 PsiBlast_CBE 82.3542% -27 - C10 -3SZD 2.4 ?
28 PsiBlast_CBE 82.2842% -28 - C10 -4FMS 1.9 ?
34 HHSearch 82.0647% -34 * C10 *3SZV 0.9 ?
8 PsiBlast_PDB 80.2150% -31 - C10 -2Y0K 2.7 ?
19 PsiBlast_PDB 76.4236% -18 - C10 -2ODJ 2.4 PORD_PSEAE