@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3590: (2016-02-18 )
MSEPSIVLIGIVGTGAMGQGIAQLAACAGLSVLLYDSRQGVALQAREQIATVLARQVERGRLEAEAVERAMGNLRVVEDLRVLGGCQLVIEAIVENLEAKQALFRQLEEVVGDEAILASNTSSLSVTAIASACRDPGRIAGLHFFNPVPLMRLVEVIEGLATRTGIAERLCALVATFGHQAVRATDSPGFIVNHAGRAFGTEALRILGEGVAPVAAIDEVLREGAGFRMGPFELFDLVGLDVSLPVMESIYRQYYEEPRYRPHPLLRQMLAAGRLGRKSGQGFYRYDGAGQVPVAAPAVAPGAALPPVWLGVDDEHDRAPLLMLLQRLGAEVESGERPSGAPLCLLAPLGADVSAAARRFAVDPTRSLAIDVLSDLERHRCLMACPATRAELQQAARTLFARDGVGVTLIRDSAGFIVQRTLASIVNLACDIAQQGIASVEHIDLAVRLGLGYPLGPLEWGDRLGAGRVLRILERLHALSGDPRYRPSPWLRRRAQLGLSLRQPDSPLAS

Atome Classification :

(44 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_E_5(1F0Y)
HCDH_HUMAN
[Raw transfer]




NAD_C_3(1LSO)
HCDH_HUMAN
[Raw transfer]




NAI_B_4(1F17)
HCDH_HUMAN
[Raw transfer]




NAI_A_3(1F17)
HCDH_HUMAN
[Raw transfer]




NAD_B_4(3HAD)
HCDH_HUMAN
[Raw transfer]




NAD_D_4(1LSJ)
HCDH_HUMAN
[Raw transfer]




NAD_F_6(3HDH)
HCDH_PIG
[Raw transfer]




NAD_B_6(4KUG)
?
[Raw transfer]




NAD_D_4(1LSO)
HCDH_HUMAN
[Raw transfer]




NAD_C_3(1LSJ)
HCDH_HUMAN
[Raw transfer]




NAD_C_7(4KUG)
?
[Raw transfer]




NAD_A_3(3HAD)
HCDH_HUMAN
[Raw transfer]




NAD_A_5(4KUG)
?
[Raw transfer]




NAD_E_5(3HDH)
HCDH_PIG
[Raw transfer]




NAD_D_8(4KUG)
?
[Raw transfer]




CAA_D_4(1M76)
HCDH_HUMAN
[Raw transfer]




CAA_C_3(1F0Y)
HCDH_HUMAN
[Raw transfer]




CAA_D_4(1IL0)
HCDH_HUMAN
[Raw transfer]




3HC_C_3(1F12)
HCDH_HUMAN
[Raw transfer]




CAA_C_3(1M75)
HCDH_HUMAN
[Raw transfer]




CAA_D_4(1F0Y)
HCDH_HUMAN
[Raw transfer]




CAA_D_4(1M75)
HCDH_HUMAN
[Raw transfer]




CAA_C_3(1IL0)
HCDH_HUMAN
[Raw transfer]




CAA_C_3(1IL0)
HCDH_HUMAN
[Raw transfer]




CAA_C_3(1M76)
HCDH_HUMAN
[Raw transfer]




88 HHSearch 96.2540%-113 - C3 -3MOG - PAAH_ECOLI -
1 PsiBlast_PDB 95.8839%-113 - C3 -3MOG - PAAH_ECOLI -
21 PsiBlast_CBE 95.6839%-113 - C3 -3MOG - PAAH_ECOLI -
22 PsiBlast_CBE 94.8439%-114 - C3 -3MOG - PAAH_ECOLI -
114 Fugue 87.6827%-109 - C3 -1WDK - FADB_PSEFR -
90 HHSearch 81.5430%-105 - C3 -1ZCJ - ECHP_RAT -
63 PsiBlast_CBE 79.3834%-118 - C3 -4B3H - ? -
59 PsiBlast_CBE 78.6634%-117 - C3 -4B3J - ? -
61 PsiBlast_CBE 78.3134%-117 - C3 -4B3I - ? -
91 HHSearch 78.1726%-116 - C3 -3K6J - ? -
89 HHSearch 77.8127%-117 - C3 -2WTB - MFP2_ARATH -
45 PsiBlast_CBE 77.7439%-130 - C3 -4PZD - ? -
93 HHSearch 77.6939%-117 - C3 -1F0Y 5.4 HCDH_HUMAN
37 PsiBlast_CBE 77.5839%-124 - C3 -4PZE - ? -
48 PsiBlast_CBE 77.4339%-131 - C3 -4PZD - ? -
38 PsiBlast_CBE 77.3939%-127 - C3 -4PZE - ? -
64 PsiBlast_CBE 77.3134%-119 - C3 -4B3H - ? -
34 PsiBlast_CBE 76.9439%-127 - C3 -4PZE - ? -
42 PsiBlast_CBE 76.9239%-131 - C3 -4PZD - ? -
40 PsiBlast_CBE 76.8139%-127 - C3 -4PZE - ? -
10 PsiBlast_PDB 75.8838%-122 - C3 -1LSO 9.0 HCDH_HUMAN
5 PsiBlast_PDB 75.4538%-122 - C3 -1F17 9.1 HCDH_HUMAN
6 PsiBlast_PDB 75.3038%-115 - C3 -1F0Y 10.2 HCDH_HUMAN
51 PsiBlast_CBE 75.2438%-120 - C3 -4KUG 8.7 ?
28 PsiBlast_CBE 75.1838%-120 - C3 -1LSJ 7.2 HCDH_HUMAN
11 PsiBlast_PDB 75.1838%-116 - C3 -1M75 5.3 HCDH_HUMAN
24 PsiBlast_CBE 75.0438%-121 - C3 -1F17 8.6 HCDH_HUMAN
111 Fugue 74.8537%-115 - C3 -1IL0 4.9 HCDH_HUMAN
29 PsiBlast_CBE 74.5138%-115 - C3 -1IL0 5.7 HCDH_HUMAN
50 PsiBlast_CBE 74.4338%-117 - C3 -4KUG 8.1 ?
9 PsiBlast_PDB 74.3538%-124 - C3 -1LSJ 6.7 HCDH_HUMAN
12 PsiBlast_PDB 74.3138%-114 - C3 -1M76 4.7 HCDH_HUMAN
49 PsiBlast_CBE 74.1738%-118 - C3 -4KUG 8.6 ?
27 PsiBlast_CBE 74.1038%-122 - C3 -3HAD 9.0 HCDH_HUMAN
2 PsiBlast_PDB 74.0238%-122 - C3 -3HDH 9.2 HCDH_PIG
32 PsiBlast_CBE 73.8538%-117 - C3 -1M76 5.0 HCDH_HUMAN
23 PsiBlast_CBE 73.7738%-119 - C3 -3HDH 8.6 HCDH_PIG
3 PsiBlast_PDB 73.7338%-122 - C3 -1F12 5.0 HCDH_HUMAN
16 PsiBlast_PDB 73.7138%-120 - C3 -4KUG 8.6 ?
30 PsiBlast_CBE 73.6138%-122 - C3 -1LSO 8.8 HCDH_HUMAN
7 PsiBlast_PDB 73.6038%-121 - C3 -3HAD 8.7 HCDH_HUMAN
31 PsiBlast_CBE 73.3238%-119 - C3 -1M75 5.1 HCDH_HUMAN
26 PsiBlast_CBE 73.3238%-116 - C3 -1F0Y 5.5 HCDH_HUMAN
8 PsiBlast_PDB 73.1538%-114 - C3 -1IL0 4.9 HCDH_HUMAN