@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3607: (2016-02-19 )
MTPPLLEIRNVTRRFGDFTAVDNVSLTINTGEFFTLLGPSGCGKTTLLRMLAGFDQPDSGEIRLNGQDLAGVEPEKRPVHTVFQSYALFPHMSVAQNIAFPLKMAGVAKSEIDARVEQALKDVRLADKGGRMPTQLSGGQRQRVAIARALVNRPRLLLLDEPLSALDAKLREEMQIELINLQKDVGITFVYVTHDQGEALALSHRIAVMNQGRVEQLDAPETIYSFPRSRFVADFIGQCNLLDATVEAVDGERVRIDLRGLGEVQALKSFDAQPGEACVLTLRPEKIRLAQSVTADSDEVHFRGRVAELLYLGDVTLYIVELENGERLETLLPNATPGRAKFFEVGDAVEAAWRFDAGHLVRA

Atome Classification :

(41 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]




ATP_B_6(3FVQ)
FBPC_NEIG1
[Raw transfer]




ATP_A_3(3FVQ)
FBPC_NEIG1
[Raw transfer]




ANP_J_5(3C41)
?
[Raw transfer]




ANP_K_6(3C41)
?
[Raw transfer]




AGS_B_6(3C4J)
?
[Raw transfer]




ATP_A_6(4YMV)
?
[Raw transfer]




ATP_J_5(4YMU)
?
[Raw transfer]




ATP_J_5(4YMV)
?
[Raw transfer]




ATP_A_7(4YMU)
?
[Raw transfer]




AGS_A_4(3C4J)
?
[Raw transfer]




ADP_A_5(2Q0H)
?
[Raw transfer]




ADP_B_6(2Q0H)
?
[Raw transfer]




ADP_A_2(4U00)
?
[Raw transfer]




ADP_A_5(2OLJ)
?
[Raw transfer]




ADP_B_6(2OLJ)
?
[Raw transfer]




AT4_B_6(2OLK)
?
[Raw transfer]




AT4_D_8(2OLK)
?
[Raw transfer]




AT4_C_7(2OLK)
?
[Raw transfer]




AT4_A_5(2OLK)
?
[Raw transfer]




IPA_A_6(3TIF)
Y796_METJA
[Raw transfer]




115 HHSearch 90.8740%-104 - C2 -3RLF - MALK_ECOLI -
1 PsiBlast_PDB 89.2742%-115 - C2 -1V43 - ? -
14 PsiBlast_PDB 88.8943%-111 - C2 -3PUV - MALK_ECOLI -
12 PsiBlast_PDB 87.8543%-109 - C2 -3PUZ - MALK_ECOLI -
20 PsiBlast_PDB 87.8243%-110 - C2 -4KI0 - ? -
24 PsiBlast_CBE 87.7243%-109 - C2 -3PUZ - MALK_ECOLI -
17 PsiBlast_PDB 87.7143%-111 - C2 -3RLF - MALK_ECOLI -
15 PsiBlast_PDB 87.6243%-111 - C2 -3PUW - MALK_ECOLI -
29 PsiBlast_CBE 87.5343%-110 - C2 -2AWN - MALK_ECOLI -
112 HHSearch 87.3141%-103 - C2 -2YYZ - ? -
11 PsiBlast_PDB 87.2843%-109 - C2 -3PUY - MALK_ECOLI -
23 PsiBlast_CBE 87.2243%-110 - C2 -3RLF - MALK_ECOLI -
16 PsiBlast_PDB 87.1943%-110 - C2 -3PUX - MALK_ECOLI -
2 PsiBlast_PDB 87.1142%-112 - C2 -1VCI - ? -
34 PsiBlast_CBE 86.9342%-109 - C2 -2R6G - MALK_ECOLI (first) -
111 HHSearch 86.8542% -99 - C2 -1V43 - ? -
19 PsiBlast_PDB 86.6343%-111 - C2 -4KHZ - ? -
33 PsiBlast_CBE 86.5042%-111 - C2 -2R6G - MALK_ECOLI (first) -
22 PsiBlast_CBE 85.9643%-107 - C2 -4KI0 - ? -
13 PsiBlast_PDB 85.8743%-107 - C2 -3PV0 - MALK_ECOLI -
48 PsiBlast_CBE 75.2237%-102 - C2 -3FVQ 6.8 FBPC_NEIG1
47 PsiBlast_CBE 75.1637%-102 - C2 -3FVQ 7.8 FBPC_NEIG1
59 PsiBlast_CBE 60.1634%-102 - C2 -4YMV 5.9 ?
58 PsiBlast_CBE 59.9634%-104 - C2 -4YMV 5.5 ?
61 PsiBlast_CBE 59.8834%-107 - C2 -4YMU 5.8 ?
94 PsiBlast_CBE 59.7432%-106 - C2 -1B0U 5.9 HISP_SALTY
62 PsiBlast_CBE 59.4934%-105 - C2 -3C41 5.9 ?
75 PsiBlast_CBE 59.2234%-104 - C2 -2OLK 5.9 ?
72 PsiBlast_CBE 59.2234%-100 - C2 -2OLK 5.9 ?
64 PsiBlast_CBE 59.2134%-108 - C2 -3C4J 5.3 ?
60 PsiBlast_CBE 59.1534%-105 - C2 -4YMU 6.0 ?
77 PsiBlast_CBE 58.9334%-103 - C2 -2OLJ 6.2 ?
63 PsiBlast_CBE 58.7834%-104 - C2 -3C41 7.0 ?
67 PsiBlast_CBE 58.5834%-102 - C2 -2Q0H 5.5 ?
73 PsiBlast_CBE 58.5534%-104 - C2 -2OLK 6.0 ?
57 PsiBlast_CBE 58.3534%-102 - C2 -4U00 6.2 ?
76 PsiBlast_CBE 58.0934%-101 - C2 -2OLJ 5.9 ?
74 PsiBlast_CBE 57.6634% -98 - C2 -2OLK 5.9 ?
65 PsiBlast_CBE 57.3834%-100 - C2 -3C4J 6.5 ?
66 PsiBlast_CBE 56.2234%-100 - C2 -2Q0H 5.9 ?
88 PsiBlast_CBE 53.1237% -95 - C2 -3TIF 3.3 Y796_METJA