@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3622: (2016-02-19 )
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEEEVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLLDTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLREILEKNGLSSDALFQ

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_I_9(4YLP)
RPOD_ECOLI
[Raw transfer]
-
NACID_R_18(4YLP)
RPOD_ECOLI
[Raw transfer]
-
NACID_H_8(4OIO)
?
[Raw transfer]
-
NACID_H_8(4Q5S)
?
[Raw transfer]
-
NACID_H_8(4OIP)
?
[Raw transfer]
-
NACID_H_13(4G7Z)
?
[Raw transfer]
-
NACID_H_8(4OIN)
?
[Raw transfer]
-
CHAIN_H_8(4Q4Z)
?
[Raw transfer]
-
NACID_H_8(4OIR)
?
[Raw transfer]
-
NACID_H_8(4G7O)
?
[Raw transfer]
-
NACID_H_8(4G7H)
?
[Raw transfer]
-
NACID_H_8(4OIQ)
?
[Raw transfer]
-
NACID_B_2(3UGP)
SIGA_THEAQ
[Raw transfer]
-
NACID_R_15(4G7Z)
?
[Raw transfer]
-
NACID_R_17(4G7O)
?
[Raw transfer]
-
NACID_B_2(3UGO)
SIGA_THEAQ
[Raw transfer]
-
NACID_D_1(4KI2)
SIGA_THEAQ
[Raw transfer]
-
NACID_E_2(4KI2)
SIGA_THEAQ
[Raw transfer]
-
NACID_R_16(4G7H)
?
[Raw transfer]
-
74 HHSearch 89.4741% -80 - C4 -2A6H - ? -
19 PsiBlast_PDB 85.2944% -88 - C4 -4G7Z 11.4 ?
66 Fugue 85.2335% -51 - C4 -4LLG - RPOD_ECOLI -
27 PsiBlast_CBE 85.2344% -90 - C4 -4OIO 10.9 ?
28 PsiBlast_CBE 85.0544% -88 - C4 -4OIN 11.7 ?
17 PsiBlast_PDB 84.9244% -88 - C4 -4G7H 11.6 ?
20 PsiBlast_PDB 84.8444% -84 - C4 -4MQ9 - ? -
16 PsiBlast_PDB 84.7944% -85 - C4 -4Q4Z 11.4 ?
18 PsiBlast_PDB 84.7744% -87 - C4 -4G7O 9.5 ?
24 PsiBlast_CBE 84.4844% -89 - C4 -4OIR 11.5 ?
26 PsiBlast_CBE 84.0744% -84 - C4 -4OIP 12.1 ?
30 PsiBlast_CBE 83.7944% -88 - C4 -4G7O 8.9 ?
25 PsiBlast_CBE 83.6444% -85 - C4 -4OIQ 10.1 ?
29 PsiBlast_CBE 83.3244% -88 - C4 -4G7Z 11.8 ?
31 PsiBlast_CBE 83.0944% -84 - C4 -4G7H 11.1 ?
39 PsiBlast_CBE 82.4640% -89 - C4 -4JKR - RPOD_ECOLI -
15 PsiBlast_PDB 81.6644% -81 - C4 -4Q5S 12.9 ?
33 PsiBlast_CBE 81.5340% -82 - C4 -4KN4 - RPOD_ECOLI -
38 PsiBlast_CBE 81.4740% -91 - C4 -4YLP 3.5 RPOD_ECOLI
35 PsiBlast_CBE 81.2540% -79 - C4 -4KMU - RPOD_ECOLI -
37 PsiBlast_CBE 80.0140% -92 - C4 -4YLP 3.5 RPOD_ECOLI
42 PsiBlast_CBE 63.8955% -87 - C4 -4KI2 10.3 SIGA_THEAQ
45 PsiBlast_CBE 57.5255% -91 - C4 -3UGO 14.6 SIGA_THEAQ
44 PsiBlast_CBE 57.3455% -85 - C4 -3UGP 13.9 SIGA_THEAQ
43 PsiBlast_CBE 56.2655% -85 - C4 -4KI2 13.0 SIGA_THEAQ