@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3770: (2016-02-20 )
MLRISQEALTFDDVLLIPGYSEVLPKDVSLKTRLTRGIELNIPLVSAAMDTVTEARLAIAMAQEGGIGIIHKNMGIEQQAAEVRKVKKHETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVEQGELVGIVTGRDLRVKPNAGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKTYPLASKDEQGRLRVGAAVGTGADTGERVAALVAAGVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEAGADAVKVGIGPGSICTTRIVAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMGSMFAGTEEAPGEIELFQGRSYKSYRGMGSLGAMSGSQGSSDRYFQDASAGAEKLVPEGIEGRVPYKGALSAIVHQLMGGLRAAMGYTGSADIQQMRTQPQFVRITGAGMAESHVHDVQITKEAPNYRVG

Atome Classification :

(51 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_B_8(4X3Z)
?
[Raw transfer]




NAJ_A_4(4QNE)
?
[Raw transfer]




NAD_A_4(4X3Z)
?
[Raw transfer]




NAJ_B_7(4QNE)
?
[Raw transfer]




IMP_A_3(5AHM)
?
[Raw transfer]




IMP_B_6(4FO4)
?
[Raw transfer]




IMP_A_3(4FO4)
?
[Raw transfer]




IMP_A_2(4FXS)
?
[Raw transfer]




IMP_U_21(1JR1)
IMDH2_CRIGR
[Raw transfer]




IMP_A_5(4IX2)
?
[Raw transfer]




IMP_B_6(4IX2)
?
[Raw transfer]




NAD_A_3(4ZQM)

[Raw transfer]




IMP_A_17(1JR1)
IMDH2_CRIGR
[Raw transfer]




XMP_A_3(2CU0)
IMDH_PYRHO
[Raw transfer]




IMP_D_11(4IX2)
?
[Raw transfer]




XMP_A_3(2CU0)
IMDH_PYRHO
[Raw transfer]




IMP_C_8(4IX2)
?
[Raw transfer]




Q21_B_18(4MY8)
?
[Raw transfer]




Q21_B_13(4MY8)
?
[Raw transfer]




XMP_A_2(4QQ3)
?
[Raw transfer]




IMP_B_6(4AF0)
?
[Raw transfer]




IMP_A_4(4AF0)
?
[Raw transfer]




Q21_A_6(4MY8)
?
[Raw transfer]




RVP_Y_25(1NF7)
IMDH2_HUMAN
[Raw transfer]




RVP_A_4(1ME8)
IMDH_TRIFO
[Raw transfer]




KP3_A_3(4ZQP)
?
[Raw transfer]




4QO_A_3(4ZQN)
?
[Raw transfer]




2EY_B_8(4MYA)
?
[Raw transfer]




MYD_U_21(1NF7)
IMDH2_HUMAN
[Raw transfer]




2EY_A_4(4MYA)
?
[Raw transfer]




39H_A_6(4QM1)
?
[Raw transfer]




XMP_A_3(3TSD)
?
[Raw transfer]




39H_C_9(4QM1)
?
[Raw transfer]




CPR_A_9(1NFB)
IMDH2_HUMAN
[Raw transfer]




CPR_B_13(1NFB)
IMDH2_HUMAN
[Raw transfer]




IMP_A_2(5AHN)
?
[Raw transfer]




Q67_A_3(4ZQO)

[Raw transfer]




IMP_A_3(3USB)
?
[Raw transfer]




IMP_A_3(3USB)
?
[Raw transfer]




39H_B_8(4QM1)
?
[Raw transfer]




39H_C_10(4QM1)
?
[Raw transfer]




2 PsiBlast_PDB 96.71100%-122 - C2 -4DQW - ? -
21 PsiBlast_CBE 94.60100%-124 - C2 -4DQW - ? -
5 PsiBlast_PDB 88.1662%-104 - C2 -4FXS 6.7 ?
6 PsiBlast_PDB 84.1256% -92 - C2 -3TSB - ? -
116 HHSearch 83.6056%-119 - C- -1ZFJ - IMDH_STRPY -
10 PsiBlast_PDB 82.8553%-119 - C- -1ZFJ - IMDH_STRPY -
1 PsiBlast_PDB 82.71100%-113 - C2 -4AVF - ? -
4 PsiBlast_PDB 81.4299%-117 - C2 -5AHN 5.0 ?
7 PsiBlast_PDB 81.1656%-101 - C2 -3TSD 5.9 ?
3 PsiBlast_PDB 80.60100%-114 - C2 -3ZFH - ? -
115 HHSearch 79.8957%-102 - C2 -3USB 4.6 ?
9 PsiBlast_PDB 79.4754%-103 - C2 -3USB 4.6 ?
67 PsiBlast_CBE 73.7641% -97 - C2 -1NF7 5.0 IMDH2_HUMAN
68 PsiBlast_CBE 73.1841% -96 - C2 -1NF7 4.3 IMDH2_HUMAN
64 PsiBlast_CBE 73.0641% -98 - C2 -1JR1 6.1 IMDH2_CRIGR
12 PsiBlast_PDB 72.8197%-103 - C2 -5AHM 6.4 ?
121 HHSearch 72.3753%-107 - C2 -1EEP - IMDH_BORBU -
119 HHSearch 72.1958% -98 - C2 -1VRD - ? -
118 HHSearch 72.1250% -96 - C2 -2CU0 6.7 IMDH_PYRHO
8 PsiBlast_PDB 72.0457% -98 - C2 -1VRD - ? -
13 PsiBlast_PDB 71.7750% -96 - C2 -2CU0 6.7 IMDH_PYRHO
63 PsiBlast_CBE 69.7741% -97 - C2 -1JR1 6.1 IMDH2_CRIGR
117 HHSearch 68.4534% -94 - C2 -1ME8 6.6 IMDH_TRIFO
66 PsiBlast_CBE 67.9141% -98 - C2 -1NFB 5.3 IMDH2_HUMAN
65 PsiBlast_CBE 67.7341% -97 - C2 -1NFB 7.2 IMDH2_HUMAN
71 PsiBlast_CBE 67.6740% -94 - C2 -4AF0 6.7 ?
72 PsiBlast_CBE 67.1141% -95 - C2 -4AF0 6.8 ?
14 PsiBlast_PDB 65.7269% -98 - C2 -4FO4 6.0 ?
17 PsiBlast_PDB 65.4169% -95 - C2 -4QNE 5.0 ?
18 PsiBlast_PDB 64.9769% -97 - C2 -4X3Z 6.1 ?
23 PsiBlast_CBE 64.8969% -97 - C2 -4QNE 5.5 ?
27 PsiBlast_CBE 64.7469% -97 - C2 -4FO4 6.3 ?
22 PsiBlast_CBE 64.7469% -97 - C2 -4X3Z 5.2 ?
24 PsiBlast_CBE 64.2069%-104 - C2 -4IX2 5.6 ?
15 PsiBlast_PDB 64.0569% -97 - C2 -4IX2 5.2 ?
25 PsiBlast_CBE 63.9469%-101 - C2 -4IX2 6.1 ?
26 PsiBlast_CBE 63.5169% -95 - C2 -4IX2 4.1 ?
89 PsiBlast_CBE 63.2161%-104 - C2 -4ZQP 7.9 ?
91 PsiBlast_CBE 63.0261%-102 - C2 -4ZQN 5.0 ?
90 PsiBlast_CBE 62.9561%-103 - C2 -4ZQO 5.1
42 PsiBlast_CBE 61.7962%-102 - C2 -4MYA 5.2 ?
92 PsiBlast_CBE 61.7561%-109 - C2 -4ZQM 6.1
43 PsiBlast_CBE 61.6862% -99 - C2 -4MYA 5.1 ?
16 PsiBlast_PDB 61.5269%-113 - C2 -4QQ3 6.9 ?
54 PsiBlast_CBE 61.0362%-101 - C2 -4MY8 5.5 ?
53 PsiBlast_CBE 60.8562%-106 - C2 -4MY8 5.4 ?
32 PsiBlast_CBE 60.4462%-102 - C2 -4QM1 5.1 ?
31 PsiBlast_CBE 59.7962%-101 - C2 -4QM1 5.0 ?
33 PsiBlast_CBE 59.7462%-101 - C2 -4QM1 4.8 ?
30 PsiBlast_CBE 59.5762% -99 - C2 -4QM1 5.1 ?
20 PsiBlast_PDB 59.3662% -98 - C2 -4MY8 5.6 ?