@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3950: (2016-02-22 )
MTFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQRLTLEGPQVAANSVRALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMKLRKGVDILVATPGRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKRQTLLFSATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCHLLQANRWRQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLLVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAIETLIGQTLQRREEPDFEPEHRVPQTAPGGVVLKKPKKPKKPKAAESVGKPGKIHLGSWFDSSAPTVKAVRKAPGFGAGAAGKPKKRPSGK

Atome Classification :

(66 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_A_3(4D26)
?
[Raw transfer]




ANP_A_3(4D25)
?
[Raw transfer]




ANP_A_7(3FHT)
DD19B_HUMAN
[Raw transfer]




ANP_A_7(3FHT)
DD19B_HUMAN
[Raw transfer]




ANP_B_12(3FHT)
DD19B_HUMAN
[Raw transfer]




ADP_A_3(3PEW)
DBP5_YEAST
[Raw transfer]




ANP_A_3(3SQX)
MS116_YEAST
[Raw transfer]




ANP_A_3(3I5X)
MS116_YEAST
[Raw transfer]




ADP_A_3(3PEY)
DBP5_YEAST
[Raw transfer]




ANP_A_3(3SQW)
MS116_YEAST
[Raw transfer]




ANP_A_3(3I5X)
MS116_YEAST
[Raw transfer]




ADP_A_3(3PEY)
DBP5_YEAST
[Raw transfer]




ANP_A_3(3I5Y)
MS116_YEAST
[Raw transfer]




ANP_A_3(3G0H)
DD19B_HUMAN
[Raw transfer]




ADP_A_4(4PX9)
DDX3X_HUMAN
[Raw transfer]




ADP_A_3(3I62)
MS116_YEAST
[Raw transfer]




ANP_A_7(2J0S)
IF4A3_HUMAN
[Raw transfer]




8OD_B_7(3NBF)
?
[Raw transfer]




ADP_B_5(4PX9)
DDX3X_HUMAN
[Raw transfer]




ADP_A_3(3I61)
MS116_YEAST
[Raw transfer]




ADP_C_6(4PX9)
DDX3X_HUMAN
[Raw transfer]




8OP_C_10(3NBF)
?
[Raw transfer]




ADP_A_2(4PXA)
DDX3X_HUMAN
[Raw transfer]




ADP_A_3(3DKP)
DDX52_HUMAN
[Raw transfer]




AMP_B_5(3IUY)
DDX53_HUMAN
[Raw transfer]




AMP_A_3(3BER)
DDX47_HUMAN
[Raw transfer]




AMP_A_2(2GXQ)
?
[Raw transfer]




ADP_A_3(2PL3)
DDX10_HUMAN
[Raw transfer]




AMP_A_8(2GXS)
?
[Raw transfer]




ADP_B_4(3FMO)
DD19B_HUMAN
[Raw transfer]




ADP_A_3(2OXC)
DDX20_HUMAN
[Raw transfer]




ADP_A_3(3RRN)
DBP5_YEAST
[Raw transfer]




8OD_A_5(3NBF)
?
[Raw transfer]




AMP_A_2(2I4I)
DDX3X_HUMAN
[Raw transfer]




AMP_B_9(2GXS)
?
[Raw transfer]




AMP_A_3(3IUY)
DDX53_HUMAN
[Raw transfer]




AMP_A_2(2I4I)
DDX3X_HUMAN
[Raw transfer]




8OX_B_6(3MWL)
?
[Raw transfer]




ADP_B_4(2OXC)
DDX20_HUMAN
[Raw transfer]




ADP_A_3(3EWS)
DD19B_HUMAN
[Raw transfer]




AMP_A_3(4KBF)
?
[Raw transfer]




8OP_D_12(3NBF)
?
[Raw transfer]




AMP_A_5(2VSX)
IF4A_YEAST
[Raw transfer]




ADP_B_8(3FE2)
DDX5_HUMAN
[Raw transfer]




ADP_A_4(3FE2)
DDX5_HUMAN
[Raw transfer]




8OP_B_6(3MWK)
?
[Raw transfer]




AMP_B_6(2VSO)
IF4A_YEAST
[Raw transfer]




AMP_B_6(2VSX)
IF4A_YEAST
[Raw transfer]




AMP_A_5(2VSO)
IF4A_YEAST
[Raw transfer]




FLC_C_3(1T6N)
DX39B_HUMAN
[Raw transfer]




FLC_D_4(1T6N)
DX39B_HUMAN
[Raw transfer]




1PE_A_4(4BRW)
DHH1_YEAST
[Raw transfer]




NACID_E_5(4DB2)
MS116_YEAST
[Raw transfer]

-

NACID_I_9(4DB2)

[Raw transfer]

-

IPA_D_4(1XTI)
DX39B_HUMAN
[Raw transfer]




IPA_E_5(1XTI)
DX39B_HUMAN
[Raw transfer]




NACID_B_2(3SQW)
MS116_YEAST
[Raw transfer]

-

NACID_E_1(2DB3)
VASA1_DROME
[Raw transfer]

-

1 PsiBlast_PDB 87.9441%-105 - C4 -4D25 8.4 ?
30 PsiBlast_CBE 87.8043%-115 - C4 -4KBG - ? -
31 PsiBlast_CBE 87.7843%-122 - C4 -4KBF - ? -
2 PsiBlast_PDB 87.4641%-103 - C4 -4D26 5.6 ?
121 HHSearch 85.9439%-123 - C4 -2I4I 5.4 DDX3X_HUMAN
15 PsiBlast_PDB 85.5843%-108 - C4 -4KBF 5.0 ?
114 HHSearch 84.5437%-108 - C4 -2DB3 12.1 VASA1_DROME
23 PsiBlast_CBE 84.3136%-105 - C4 -2DB3 - VASA1_DROME -
54 PsiBlast_CBE 84.2731% -98 - C4 -3SQX 9.1 MS116_YEAST
4 PsiBlast_PDB 84.0336%-104 - C4 -2DB3 - VASA1_DROME -
21 PsiBlast_CBE 83.9936%-104 - C4 -2DB3 - VASA1_DROME -
49 PsiBlast_CBE 83.9831%-101 - C4 -3SQW 8.4 MS116_YEAST
22 PsiBlast_CBE 83.9436%-104 - C4 -2DB3 - VASA1_DROME -
14 PsiBlast_PDB 83.8435%-126 - C4 -4CT4 - DDX6_HUMAN -
52 PsiBlast_CBE 83.8231% -99 - C4 -3I5Y 8.2 MS116_YEAST
51 PsiBlast_CBE 83.7831%-101 - C4 -3I61 6.5 MS116_YEAST
5 PsiBlast_PDB 83.6638%-108 - C4 -4PXA 3.9 DDX3X_HUMAN
3 PsiBlast_PDB 83.5239%-123 - C4 -2I4I 5.4 DDX3X_HUMAN
29 PsiBlast_CBE 83.5135%-124 - C4 -4CT4 - DDX6_HUMAN -
47 PsiBlast_CBE 83.5032%-121 - C4 -3EWS 6.4 DD19B_HUMAN
53 PsiBlast_CBE 83.2831%-100 - C4 -3I5X 8.4 MS116_YEAST
50 PsiBlast_CBE 83.0131%-100 - C4 -3I62 6.4 MS116_YEAST
117 HHSearch 82.6934%-110 - C4 -3FHT 8.5 DD19B_HUMAN
44 PsiBlast_CBE 81.6832%-112 - C4 -3FHT 8.6 DD19B_HUMAN
8 PsiBlast_PDB 81.1034%-112 - C4 -2J0S 8.6 IF4A3_HUMAN
35 PsiBlast_CBE 80.9935%-126 - C4 -2VSX 4.2 IF4A_YEAST
34 PsiBlast_CBE 80.8535%-126 - C4 -2VSX 3.8 IF4A_YEAST
116 HHSearch 80.8233%-126 - C4 -1XTI 3.6 DX39B_HUMAN
48 PsiBlast_CBE 80.7332%-110 - C4 -3G0H 7.6 DD19B_HUMAN
43 PsiBlast_CBE 80.6932%-113 - C4 -3FHT 8.9 DD19B_HUMAN
19 PsiBlast_PDB 80.4135%-118 - C4 -4BRW 1.9 DHH1_YEAST
37 PsiBlast_CBE 80.2635%-126 - C4 -2VSO 4.5 IF4A_YEAST
39 PsiBlast_CBE 80.2432%-121 - C4 -3RRN 4.6 DBP5_YEAST
33 PsiBlast_CBE 80.2435%-125 - C4 -1XTI 3.9 DX39B_HUMAN
36 PsiBlast_CBE 80.1635%-127 - C4 -2VSO 4.6 IF4A_YEAST
41 PsiBlast_CBE 79.8332%-118 - C4 -3PEW 7.0 DBP5_YEAST
42 PsiBlast_CBE 79.6332%-119 - C4 -3PEY 7.6 DBP5_YEAST
119 HHSearch 77.4433%-109 - C4 -3PEY 7.7 DBP5_YEAST
120 HHSearch 76.7632% -99 - C4 -3I5X 8.3 MS116_YEAST
124 HHSearch 76.4832% -97 - C4 -3SQW 12.9 MS116_YEAST
74 PsiBlast_CBE 63.5537%-122 - C4 -4PX9 4.8 DDX3X_HUMAN
72 PsiBlast_CBE 63.2937%-122 - C4 -4PX9 4.7 DDX3X_HUMAN
73 PsiBlast_CBE 63.0437%-120 - C4 -4PX9 4.3 DDX3X_HUMAN
55 PsiBlast_CBE 62.5343%-122 - C4 -3BER 4.4 DDX47_HUMAN
63 PsiBlast_CBE 61.2245%-120 - C4 -3NBF 3.9 ?
60 PsiBlast_CBE 60.5445%-130 - C4 -3NBF 4.0 ?
58 PsiBlast_CBE 60.2045%-124 - C4 -2GXS 5.5 ?
59 PsiBlast_CBE 60.1345%-125 - C4 -2GXQ 5.8 ?
61 PsiBlast_CBE 60.0945%-125 - C4 -3NBF 4.6 ?
62 PsiBlast_CBE 59.8945%-118 - C4 -3NBF 5.5 ?
64 PsiBlast_CBE 59.8245%-128 - C4 -3MWL 5.1 ?
57 PsiBlast_CBE 59.7745%-124 - C4 -2GXS 4.9 ?
94 PsiBlast_CBE 58.8133%-126 - C4 -3FMO 6.4 DD19B_HUMAN
78 PsiBlast_CBE 58.6242%-133 - C4 -3IUY 5.5 DDX53_HUMAN
66 PsiBlast_CBE 58.6245%-122 - C4 -3MWK 3.9 ?
77 PsiBlast_CBE 58.5242%-134 - C4 -3IUY 5.6 DDX53_HUMAN
88 PsiBlast_CBE 57.9033%-129 - C4 -2OXC 5.0 DDX20_HUMAN
82 PsiBlast_CBE 57.8537%-120 - C4 -1T6N 2.5 DX39B_HUMAN
81 PsiBlast_CBE 57.4637%-122 - C4 -1T6N 2.9 DX39B_HUMAN
89 PsiBlast_CBE 57.0933%-127 - C4 -2OXC 6.8 DDX20_HUMAN
83 PsiBlast_CBE 56.8238%-120 - C4 -2PL3 5.7 DDX10_HUMAN
79 PsiBlast_CBE 55.4440%-122 - C4 -3FE2 5.3 DDX5_HUMAN
80 PsiBlast_CBE 53.8540%-121 - C4 -3FE2 4.1 DDX5_HUMAN
85 PsiBlast_CBE 51.6536%-110 - C4 -3DKP 4.7 DDX52_HUMAN
100 PsiBlast_CBE 34.7431% -82 - C4 -4DB2 3.9 MS116_YEAST
99 PsiBlast_CBE 31.0931% -92 - C4 -4DB2 3.3