@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3977: (2016-02-22 )
MSRSETLFNNAQKHIPGGVNSPVRAFKSVGGTPLFFKHAEGAYVLDEDDKRYVDYVGSWGPMILGHSHPDVLDAVRRQLDHGLSYGAPTALEVEMADLVCSMVPSMEMVRMVSSGTEATMSAIRLARGYTGRDSIIKFEGCYHGHSDSLLVKAGSGALTFGVPNSPGVPAAFAKHTLTLPFNDIEAVRKTLGEVGKEVACIIVEPVAGNMNCVPPAPGFLEGLREACDEHGVVLIFDEVMTGFRVALGGAQAYYGVTPDLSTFGKIIGGGMPVGAFGGKREIMQQISPLGPVYQAGTLSGNPLAMAAGLTTLRLISRPGFHDELTAYTTRMLDGLQQRADAAGIPFVTTQAGGMFGLYFSGADAIVTFEDVMASDVERFKRFFHLMLDGGVYLAPSAFEAGFTSIAHGDKELEITLNAAEKAFAALK

Atome Classification :

(60 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

EA5_A_3(2HP1)
GSA_SYNP6
[Raw transfer]




PXG_B_4(3FQ7)
GSA_SYNP6
[Raw transfer]




KE4_A_3(2HP2)
GSA_SYNP6
[Raw transfer]




PMP_B_4(2HOZ)
GSA_SYNP6
[Raw transfer]




PMP_E_5(3GSB)
GSA_SYNP6
[Raw transfer]




PMP_B_5(3FQA)
GSA_SYNP6
[Raw transfer]




PMP_A_3(2GSA)
GSA_SYNP6
[Raw transfer]




PMP_A_2(3BS8)
GSA_BACSU
[Raw transfer]




PMP_C_3(3GSB)
GSA_SYNP6
[Raw transfer]




PMP_A_3(3FQA)
GSA_SYNP6
[Raw transfer]




PMP_A_3(2GSA)
GSA_SYNP6
[Raw transfer]




IK2_B_5(4AOA)
BFAT_VARPD
[Raw transfer]




PMP_B_4(3FQ8)
GSA_SYNP6
[Raw transfer]




IK2_A_3(4AOA)
BFAT_VARPD
[Raw transfer]




PMP_A_3(3FQ8)
GSA_SYNP6
[Raw transfer]




PMP_C_8(2ZSM)
GSA_AERPE
[Raw transfer]




PLR_A_3(3USF)
GSA_SYNE7
[Raw transfer]




PMP_A_4(2E7U)
GSA_THET8
[Raw transfer]




PMP_A_3(3FQ8)
GSA_SYNP6
[Raw transfer]




PMP_A_4(2E7U)
GSA_THET8
[Raw transfer]




PMP_B_6(2ZSM)
GSA_AERPE
[Raw transfer]




PMP_A_2(2EPJ)
GSA_AERPE
[Raw transfer]




PMP_A_2(2EPJ)
GSA_AERPE
[Raw transfer]




PMP_A_2(2ZSL)
GSA_AERPE
[Raw transfer]




PLR_B_5(3USF)
GSA_SYNE7
[Raw transfer]




PLP_B_13(4JEY)
ARGD_SALTY
[Raw transfer]




PLP_A_3(2PB2)
ARGD_SALTY
[Raw transfer]




PLP_A_3(4JEY)
ARGD_SALTY
[Raw transfer]




PLP_A_3(4GSA)
GSA_SYNP6
[Raw transfer]




PLP_B_4(2HP2)
GSA_SYNP6
[Raw transfer]




PMP_A_4(2ZSM)
GSA_AERPE
[Raw transfer]




PLP_B_4(4GSA)
GSA_SYNP6
[Raw transfer]




PLR_A_3(2CFB)
GSA_THEEB
[Raw transfer]




PLP_B_4(2GSA)
GSA_SYNP6
[Raw transfer]




P00_B_18(4JEZ)
ARGD_SALTY
[Raw transfer]




PLP_B_11(2YKY)
?
[Raw transfer]




PLP_C_21(2YKY)
?
[Raw transfer]




PLP_A_5(2YKY)
?
[Raw transfer]




PLP_B_4(2HP1)
GSA_SYNP6
[Raw transfer]




PLP_A_3(4JF1)
ARGD_SALTY
[Raw transfer]




PLP_A_3(2PB0)
ARGD_SALTY
[Raw transfer]




PLP_B_9(4JF1)
ARGD_SALTY
[Raw transfer]




PLP_B_4(2PB0)
ARGD_SALTY
[Raw transfer]




PLP_C_11(2YKX)
?
[Raw transfer]




PLP_B_9(2YKX)
?
[Raw transfer]




PLP_A_4(2YKX)
?
[Raw transfer]




PLP_B_4(4AO9)
BFAT_VARPD
[Raw transfer]




PLP_A_3(4AO9)
BFAT_VARPD
[Raw transfer]




PLP_B_10(2YKU)
?
[Raw transfer]




PLP_A_4(2YKU)
?
[Raw transfer]




PLP_C_17(2YKU)
?
[Raw transfer]




POI_C_3(1WKG)
ARGD_THET8
[Raw transfer]




PPE_D_4(1WKH)
ARGD_THET8
[Raw transfer]




PPE_C_3(1WKH)
ARGD_THET8
[Raw transfer]




PLP_B_4(1VEF)
ARGD_THET8
[Raw transfer]




PLP_A_3(1VEF)
ARGD_THET8
[Raw transfer]




POI_D_4(1WKG)
ARGD_THET8
[Raw transfer]




GAB_D_4(3GSB)
GSA_SYNP6
[Raw transfer]




HOZ_B_5(2HP2)
GSA_SYNP6
[Raw transfer]




HOZ_B_5(2HP1)
GSA_SYNP6
[Raw transfer]




GAB_A_4(3FQA)
GSA_SYNP6
[Raw transfer]




EDO_C_21(2YKV)
?
[Raw transfer]




EDO_C_12(2YKX)
?
[Raw transfer]




6 PsiBlast_PDB 95.4155%-110 - C1 -2HOZ - GSA_SYNP6 -
9 PsiBlast_PDB 93.6955%-106 - C1 -3FQ7 - GSA_SYNP6 -
12 PsiBlast_PDB 93.3455%-106 - C1 -3FQ8 4.9 GSA_SYNP6
11 PsiBlast_PDB 93.3455%-108 - C1 -3FQA 4.1 GSA_SYNP6
31 PsiBlast_CBE 93.0555%-105 - C1 -3FQ8 4.0 GSA_SYNP6
29 PsiBlast_CBE 93.0155%-106 * C1 *3FQ7 5.9 GSA_SYNP6
1 PsiBlast_PDB 93.0154%-107 - C1 -3BS8 3.9 GSA_BACSU
21 PsiBlast_CBE 93.0055%-105 - C1 -4GSA 3.2 GSA_SYNP6
98 HHSearch 92.6955%-105 - C1 -3FQ8 4.9 GSA_SYNP6
26 PsiBlast_CBE 92.5855%-108 - C1 -2HOZ 4.4 GSA_SYNP6
23 PsiBlast_CBE 92.3655%-107 - C1 -2GSA 3.4 GSA_SYNP6
8 PsiBlast_PDB 92.1355%-105 - C1 -2HP2 5.1 GSA_SYNP6
7 PsiBlast_PDB 91.9955%-105 - C1 -2HP1 5.4 GSA_SYNP6
4 PsiBlast_PDB 91.7355%-104 - C1 -3GSB 4.4 GSA_SYNP6
24 PsiBlast_CBE 91.6955%-104 - C1 -2HP2 3.7 GSA_SYNP6
22 PsiBlast_CBE 91.6755%-104 - C1 -3GSB 4.8 GSA_SYNP6
120 Fugue 91.6055%-104 - C1 -2GSA 5.1 GSA_SYNP6
10 PsiBlast_PDB 91.6055%-103 - C1 -3USF 4.4 GSA_SYNE7
2 PsiBlast_PDB 91.4755%-104 - C1 -2GSA 5.1 GSA_SYNP6
3 PsiBlast_PDB 91.2355%-105 - C1 -4GSA 3.1 GSA_SYNP6
30 PsiBlast_CBE 90.9255%-105 - C1 -3FQA 4.4 GSA_SYNP6
28 PsiBlast_CBE 90.4055%-110 - C1 -3USF 4.3 GSA_SYNE7
13 PsiBlast_PDB 90.0955%-103 - C1 -2E7U 4.3 GSA_THET8
25 PsiBlast_CBE 90.0155%-110 - C1 -2HP1 3.0 GSA_SYNP6
99 HHSearch 88.7855%-102 - C1 -2E7U 4.3 GSA_THET8
14 PsiBlast_PDB 82.7254%-117 - C1 -2CFB 2.8 GSA_THEEB
33 PsiBlast_CBE 81.0743%-107 - C1 -2ZSM 4.2 GSA_AERPE
17 PsiBlast_PDB 78.1743%-102 - C1 -2ZSM 4.3 GSA_AERPE
15 PsiBlast_PDB 77.9643%-103 - C1 -2EPJ 4.8 GSA_AERPE
16 PsiBlast_PDB 77.9343%-103 - C1 -2ZSL 4.8 GSA_AERPE
32 PsiBlast_CBE 77.3443%-103 - C1 -2ZSM 4.2 GSA_AERPE
102 HHSearch 77.3343%-101 - C1 -2EPJ 4.8 GSA_AERPE
49 PsiBlast_CBE 69.0133%-105 - C1 -4AO9 3.2 BFAT_VARPD
37 PsiBlast_CBE 69.0135% -99 - C1 -2YKY 4.3 ?
42 PsiBlast_CBE 68.8735%-101 - C1 -2YKV 2.9 ?
48 PsiBlast_CBE 68.8333%-108 - C1 -4AO9 3.0 BFAT_VARPD
46 PsiBlast_CBE 68.5833%-108 - C1 -4AOA 4.4 BFAT_VARPD
40 PsiBlast_CBE 68.3735% -98 - C1 -2YKX 3.2 ?
20 PsiBlast_PDB 67.9935% -99 - C1 -2YKX 3.4 ?
47 PsiBlast_CBE 67.5933%-107 - C1 -4AOA 4.5 BFAT_VARPD
39 PsiBlast_CBE 67.5535% -97 - C1 -2YKY 4.0 ?
41 PsiBlast_CBE 67.3235%-100 - C1 -2YKX 3.1 ?
38 PsiBlast_CBE 67.1435% -99 - C1 -2YKY 4.3 ?
44 PsiBlast_CBE 67.0935% -98 - C1 -2YKU 2.9 ?
18 PsiBlast_PDB 66.9235% -97 - C1 -2YKU 3.0 ?
45 PsiBlast_CBE 64.5335% -98 - C1 -2YKU 3.0 ?
84 PsiBlast_CBE 41.4331% -90 - C1 -4JEZ 4.2 ARGD_SALTY
78 PsiBlast_CBE 41.2432% -82 - C1 -4JF1 3.6 ARGD_SALTY
89 PsiBlast_CBE 40.8632% -82 - C1 -2PB2 3.8 ARGD_SALTY
79 PsiBlast_CBE 40.4832% -83 - C1 -4JF1 3.5 ARGD_SALTY
53 PsiBlast_CBE 40.3133% -90 - C1 -1WKG 4.4 ARGD_THET8
91 PsiBlast_CBE 40.3032% -84 - C1 -2PB0 2.9 ARGD_SALTY
50 PsiBlast_CBE 40.1333% -85 - C1 -1WKH 4.4 ARGD_THET8
90 PsiBlast_CBE 40.1232% -83 - C1 -2PB0 4.3 ARGD_SALTY
86 PsiBlast_CBE 39.6832% -82 - C1 -4JEY 3.5 ARGD_SALTY
55 PsiBlast_CBE 39.4533% -86 - C1 -1VEF 2.7 ARGD_THET8
51 PsiBlast_CBE 39.1633% -83 - C1 -1WKH 4.3 ARGD_THET8
87 PsiBlast_CBE 38.7932% -82 - C1 -4JEY 3.3 ARGD_SALTY
54 PsiBlast_CBE 37.7233% -85 - C1 -1VEF 4.0 ARGD_THET8
52 PsiBlast_CBE 36.8033% -81 - C1 -1WKG 3.3 ARGD_THET8