@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3983: (2016-02-22 )
MSEDRSSNGHKSWLDKITQAFAHEPRNRQELLELLRDAHDNKLLDSEALSIVEGAIQVADLQVRDIMVPRSQMMSIRSTQTPKEFLPAIIEAAHSRYPVVGESLDDVMGVLLAKDLLPLILHNDERPFDIKELLRPATFVPESKRLNVLLREFRANRNHMAIVIDEYGGVAGLVTIEDVLEQIVGDIEDEHDVEEDSYIKPLPSGDFIVKALTPVDAFNDFFGSEFSDEEFDTVGGLVMSAFGHLPKRNEVVELGEFRFRVLNADSRRVHLLRLSPLQN

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADN_B_6(3OI8)
?
[Raw transfer]




AMP_A_3(3LFR)
?
[Raw transfer]




AMP_A_2(4HG0)
CORC_ECOLI
[Raw transfer]




AMP_A_5(3NQR)
CORC_SALTY
[Raw transfer]




AMP_A_5(3NQR)
CORC_SALTY
[Raw transfer]




AMP_A_3(3JTF)
?
[Raw transfer]




ADN_A_3(3OI8)
?
[Raw transfer]




AMP_B_4(3LFR)
?
[Raw transfer]




1 PsiBlast_PDB 91.0150%-125 * C1 *4HG0 4.7 CORC_ECOLI
25 HHSearch 73.4048%-141 - C1 -3OI8 Error ?
43 HHSearch 73.3086%-126 - C1 -3LFR 2.7 ?
2 PsiBlast_PDB 72.5884%-126 - C1 -3LFR 5.8 ?
5 PsiBlast_PDB 71.5545%-139 - C1 -3OI8 4.0 ?
6 PsiBlast_PDB 67.4655%-133 - C1 -3NQR 5.1 CORC_SALTY
4 PsiBlast_PDB 67.4560%-134 - C1 -3JTF 6.4 ?
45 HHSearch 66.9958%-131 - C1 -3NQR 5.1 CORC_SALTY
3 PsiBlast_PDB 65.51100%-144 - C1 -3LLB - ? -
26 HHSearch 64.95100%-140 - C1 -3LLB - ? -
33 HHSearch 63.9233%-132 - C1 -3LV9 - ? -
7 PsiBlast_PDB 63.0232%-131 - C1 -3LV9 - ? -
8 PsiBlast_PDB 62.1435%-143 - C1 -3HF7 - ? -
46 Fugue 59.3533%-131 - C1 -3HF7 - ? -
10 PsiBlast_PDB 58.3328%-137 - C1 -3LHH - ? -
44 HHSearch 57.9835%-135 - C1 -3HF7 - ? -
24 HHSearch 57.6926%-136 - C1 -3LHH - ? -
31 HHSearch 57.2428%-122 - C1 -3OCM - ? -
13 PsiBlast_PDB 56.7029%-124 - C1 -4IY3 - CNNM4_HUMAN -
12 PsiBlast_PDB 55.6932%-107 - C1 -3OCM - ? -