@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4001: (2016-02-22 )
MKNAMQVLRTWAARGVQWVGVAGVIGLSGAAQAGDYDGSPQVAEFVSEMTRDYGFAGEQLMGLFRDVNRKQSILDAISRPAERVKQWKEYRPIFISDARISRGVDFWNKHAEDLARAEKEYGVPAEIIVSIIGVETFFGRNTGSYRVMDALSTLGFDYPPRADFFRKELREFLLLAREQQVDPLSLTGSYAGAMGLPQFMPSSFRAYAVDFDGDGHINIWSDPTDAIGSVASYFKQHGWVTGEPVVSVAEINDESAESAVTRGVDPTMSLGELRARGWRTHDALRDDQKVTAMRFVGDKGIEYWVGLPNFYVITRYNRSAMYAMAVYQLAGEIARARGAH

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BLG_A_4(1D0M)
MLTB_ECOLI
[Raw transfer]



BLG_A_3(1D0L)
MLTB_ECOLI
[Raw transfer]



GOL_A_4(1QDT)
MLTB_ECOLI
[Raw transfer]



NAG_A_2(1QUT)
MLTB_ECOLI
[Raw transfer]



BCN_A_3(1QDR)
MLTB_ECOLI
[Raw transfer]



BCN_A_3(1QUS)
MLTB_ECOLI
[Raw transfer]



BCN_A_3(1QUS)
MLTB_ECOLI
[Raw transfer]



BCN_A_3(1QUS)
MLTB_ECOLI
[Raw transfer]



BCN_A_3(1LTM)
MLTB_ECOLI
[Raw transfer]



SUGAR_A_2(1D0K)
MLTB_ECOLI
[Raw transfer]
-
EDO_A_3(1QDT)
MLTB_ECOLI
[Raw transfer]



SUGAR_A_3(1D0K)
MLTB_ECOLI
[Raw transfer]
-
ALA_A_5(1D0K)
MLTB_ECOLI
[Raw transfer]
1 PsiBlast_PDB 97.97100%-119 - C4 -4ANR - ? -
42 Fugue 84.1846%-103 - C4 -1QUS 2.8 MLTB_ECOLI
7 PsiBlast_PDB 83.5946%-113 - C4 -1D0L 3.9 MLTB_ECOLI
6 PsiBlast_PDB 82.8246%-111 - C4 -1D0K 3.0 MLTB_ECOLI
2 PsiBlast_PDB 82.8146%-111 - C4 -1QUS 2.8 MLTB_ECOLI
8 PsiBlast_PDB 82.7046%-112 - C4 -1D0M 5.6 MLTB_ECOLI
4 PsiBlast_PDB 82.5246%-107 - C4 -1QDR 2.6 MLTB_ECOLI
21 HHSearch 82.4347%-102 - C4 -1QUS 2.8 MLTB_ECOLI
9 PsiBlast_PDB 82.3746%-109 - C4 -1LTM 2.7 MLTB_ECOLI
5 PsiBlast_PDB 82.3046%-107 - C4 -1QDT 2.4 MLTB_ECOLI
3 PsiBlast_PDB 82.1446%-108 - C4 -1QUT 3.1 MLTB_ECOLI
44 Fugue 47.4922% -43 - C3 -4UY5 - EGTD_MYCS2 -
48 Fugue 45.1618% -40 - C3 -4RHJ - ? -
39 HHSearch 41.0118% -62 - C4 -3BKH - ? -
49 Fugue 39.8314% -49 - C1 -3UGM - PTHX1_XANOP -
45 Fugue 39.5312% -42 * C3 *4EHX - LPXK_AQUAE -
22 HHSearch 37.9516% -41 - C4 -3GXR - ? -
23 HHSearch 37.9316% -56 - C4 -1GBS - LYG_CYGAT -
47 Fugue 37.5017% -42 - C2 -1GPD - G3P_HOMAM -
43 Fugue 37.3917% -49 * C2 *4RGP - ? -