@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4006: (2016-02-22 )
MGKRIGLFGGTFDPVHIGHMRSAVEMAEQFALDELRLLPNARPPHRETPQVSAAQRLAMVERAVAGVERLTVDPRELQRDKPSYTIDTLESVRAELAADDQLFMLIGWDAFCGLPTWHRWEALLDHCHIVVLQRPDADSEPPESLRDLLAARSVADPQALKGPGGQITFVWQTPLAVSATQIRALLGAGRSVRFLVPDAVLNYIEAHHLYRAPH

Atome Classification :

(39 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NXX_A_8(2QTR)
NADD_BACAC
[Raw transfer]




NAD_H_8(1K4M)
NADD_ECOLI
[Raw transfer]




DND_H_8(1KAQ)
NADD_BACSU
[Raw transfer]




NXX_C_10(2QTR)
NADD_BACAC
[Raw transfer]




NXX_A_8(2QTR)
NADD_BACAC
[Raw transfer]




DND_C_9(3E27)
?
[Raw transfer]




DND_B_7(3E27)
?
[Raw transfer]




DND_D_11(3E27)
?
[Raw transfer]




DND_A_5(3E27)
?
[Raw transfer]




NXX_B_9(2QTR)
NADD_BACAC
[Raw transfer]




DND_I_9(1KAQ)
NADD_BACSU
[Raw transfer]




NAD_D_4(1K4M)
NADD_ECOLI
[Raw transfer]




DND_J_10(1KAQ)
NADD_BACSU
[Raw transfer]




NAD_F_6(1K4M)
NADD_ECOLI
[Raw transfer]




DND_K_11(1KAQ)
NADD_BACSU
[Raw transfer]




NAD_D_4(1K4M)
NADD_ECOLI
[Raw transfer]




ATP_B_5(1YUN)
NADD_PSEAE
[Raw transfer]




ATP_A_4(1YUN)
NADD_PSEAE
[Raw transfer]




GOL_B_8(2QTM)
?
[Raw transfer]




GOL_A_6(2QTN)
?
[Raw transfer]




GOL_B_7(2QTN)
?
[Raw transfer]




GOL_A_9(2QTN)
?
[Raw transfer]




FMT_B_7(3MLB)
NADD_BACAC
[Raw transfer]




FMT_A_4(3MLB)
NADD_BACAC
[Raw transfer]




GOL_A_6(2QTM)
?
[Raw transfer]




NCN_B_8(1YUM)
NADD_PSEAE
[Raw transfer]




NCN_A_6(1YUM)
NADD_PSEAE
[Raw transfer]




NCN_A_6(1YUM)
NADD_PSEAE
[Raw transfer]




NCN_B_5(2QTN)
?
[Raw transfer]




NCN_D_12(1YUM)
NADD_PSEAE
[Raw transfer]




NCN_C_10(1YUM)
NADD_PSEAE
[Raw transfer]




CIT_A_2(1YUL)
NADD_PSEAE
[Raw transfer]




JJZ_A_3(3MLA)
NADD_BACAC
[Raw transfer]




LJZ_A_5(3MLB)
NADD_BACAC
[Raw transfer]




LJZ_A_5(3MLB)
NADD_BACAC
[Raw transfer]




CIT_E_5(1K4M)
NADD_ECOLI
[Raw transfer]




DZ9_A_3(3HFJ)
?
[Raw transfer]




DZ9_A_3(3HFJ)
?
[Raw transfer]




JJZ_A_3(3MLA)
NADD_BACAC
[Raw transfer]




23 PsiBlast_CBE 94.71100%-144 - C3 -1YUM 3.0 NADD_PSEAE
3 PsiBlast_PDB 94.4698%-144 - C3 -1YUL 3.5 NADD_PSEAE
22 PsiBlast_CBE 93.76100%-145 - C3 -1YUM 3.2 NADD_PSEAE
2 PsiBlast_PDB 93.75100%-150 - C3 -1YUN 4.0 NADD_PSEAE
1 PsiBlast_PDB 93.46100%-145 - C3 -1YUM 2.8 NADD_PSEAE
95 HHSearch 93.43100%-145 - C3 -1YUM 2.8 NADD_PSEAE
24 PsiBlast_CBE 92.98100%-144 - C3 -1YUM 3.1 NADD_PSEAE
21 PsiBlast_CBE 92.51100%-141 - C3 -1YUN 3.5 NADD_PSEAE
5 PsiBlast_PDB 73.9738%-129 - C3 -1K4M 11.4 NADD_ECOLI
4 PsiBlast_PDB 73.8638%-131 - C3 -1K4K - NADD_ECOLI -
25 PsiBlast_CBE 73.7538%-132 - C3 -1K4M 11.7 NADD_ECOLI
26 PsiBlast_CBE 73.2738%-130 - C3 -1K4M 11.5 NADD_ECOLI
94 HHSearch 71.7539%-126 - C3 -1K4M 11.4 NADD_ECOLI
27 PsiBlast_CBE 68.4738%-126 - C3 -1K4K - NADD_ECOLI -
99 HHSearch 67.2934%-140 - C3 -1KAM - NADD_BACSU -
46 PsiBlast_CBE 65.9432%-139 - C3 -3HFJ 3.9 ?
96 HHSearch 65.6837%-131 - C3 -2QTR 8.5 NADD_BACAC
48 PsiBlast_CBE 65.6532%-143 - C3 -3DV2 - ? -
116 Fugue 65.6235%-137 - C3 -1KAM - NADD_BACSU -
52 PsiBlast_CBE 64.6032%-135 - C3 -3E27 8.6 ?
44 PsiBlast_CBE 64.5032%-142 - C3 -3MLB 4.2 NADD_BACAC
45 PsiBlast_CBE 63.8332%-141 - C3 -3MLA 3.3 NADD_BACAC
36 PsiBlast_CBE 63.3732%-132 - C3 -2QTR 7.6 NADD_BACAC
13 PsiBlast_PDB 63.2632%-142 - C3 -3MLB 3.6 NADD_BACAC
35 PsiBlast_CBE 63.2232%-134 - C3 -2QTR 9.9 NADD_BACAC
51 PsiBlast_CBE 62.8932%-129 - C3 -3E27 7.7 ?
11 PsiBlast_PDB 62.7132%-136 - C3 -3HFJ 4.3 ?
16 PsiBlast_PDB 62.6132%-137 - C3 -2QTM 2.7 ?
12 PsiBlast_PDB 62.3432%-140 - C3 -3MLA 6.2 NADD_BACAC
18 PsiBlast_PDB 62.0632%-128 - C3 -3E27 7.4 ?
17 PsiBlast_PDB 61.9132%-132 - C3 -2QTN 2.4 ?
10 PsiBlast_PDB 61.4932%-132 - C3 -2QTR 8.6 NADD_BACAC
54 PsiBlast_CBE 61.3332%-133 - C3 -2QTM 2.7 ?
53 PsiBlast_CBE 60.3632%-128 * C3 *2QTN 4.2 ?
50 PsiBlast_CBE 60.3132%-129 - C3 -3E27 8.6 ?
29 PsiBlast_CBE 59.9131%-130 - C3 -1KAQ 7.8 NADD_BACSU
31 PsiBlast_CBE 59.0031%-122 - C3 -1KAQ 9.1 NADD_BACSU
30 PsiBlast_CBE 58.6431%-120 - C3 -1KAQ 9.0 NADD_BACSU
32 PsiBlast_CBE 57.7331%-120 - C3 -1KAQ 9.6 NADD_BACSU