@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4064: (2016-02-23 )
MSALITLTNLGFAWPGQAELLDIPSFHLERGESLFLKGPSGSGKTTLLGLLGGVQKPGRGSIRLLGEDLEKLSAARRDHFRVDHTGYIFQQFNLLPFLSVRENVELPCHFSALRRQRARERHGSPAQAASHLLGQLGLGGELHERRADSLSIGQQQRVAAARALIGQPELVIADEPTSALDADSREAFLQLLFAECREAGASLLFVSHDQSLAGLFDRSLSLSDLNRAARPAGL

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ACP_A_4(4AYT)
ABCBA_HUMAN
[Raw transfer]



ANP_A_2(4AYW)
ABCBA_HUMAN
[Raw transfer]



ACP_A_4(4AYX)
ABCBA_HUMAN
[Raw transfer]



GOL_B_11(2IXF)
TAP1_RAT
[Raw transfer]



ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]
3 PsiBlast_PDB 91.1235% -88 - C1 -1F3O - Y796_METJA -
115 HHSearch 90.3533% -89 - C1 -3TIF - Y796_METJA -
2 PsiBlast_PDB 87.5734% -87 - C1 -3TIF - Y796_METJA -
21 PsiBlast_CBE 87.4434% -85 - C1 -1L2T - Y796_METJA -
1 PsiBlast_PDB 86.9634% -85 - C1 -1L2T - Y796_METJA -
22 PsiBlast_CBE 86.3134% -85 - C1 -3TIF - Y796_METJA -
112 HHSearch 82.7433% -90 - C1 -2PCJ - LOLD_AQUAE -
5 PsiBlast_PDB 80.6936% -91 - C1 -2PCL - LOLD_AQUAE -
99 HHSearch 80.5431% -90 * C1 *3TUI - METN_ECOLI -
124 Fugue 80.0430% -78 - C1 -3TUZ - METN_ECOLI -
75 PsiBlast_CBE 79.8032%-103 - C1 -4G1U - HMUV_YERPE -
4 PsiBlast_PDB 79.7236% -90 - C1 -2PCJ - LOLD_AQUAE -
49 PsiBlast_CBE 79.6833%-102 - C1 -4U02 - ? -
76 PsiBlast_CBE 79.5532%-103 - C1 -4G1U - HMUV_YERPE -
48 PsiBlast_CBE 78.9133% -95 - C1 -4U02 - ? -
50 PsiBlast_CBE 78.5833% -97 - C1 -4U02 - ? -
51 PsiBlast_CBE 78.2133% -93 - C1 -4U02 - ? -
52 PsiBlast_CBE 78.1833% -97 - C1 -4U00 - ? -
123 Fugue 78.1531% -85 - C1 -1Z47 - ? -
46 PsiBlast_CBE 77.6632% -90 - C1 -1Z47 - ? -
72 PsiBlast_CBE 61.0132% -64 - C1 -2IXF 3.9 TAP1_RAT
68 PsiBlast_CBE 58.3832% -94 - C1 -1B0U 3.2 HISP_SALTY
82 PsiBlast_CBE 53.0732% -58 - C1 -4AYW 5.9 ABCBA_HUMAN
79 PsiBlast_CBE 35.7134% -41 - C1 -4AYX 6.1 ABCBA_HUMAN
80 PsiBlast_CBE 34.5834% -36 - C1 -4AYT 6.0 ABCBA_HUMAN