@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4098: (2016-02-23 )
MVFQHDIYAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAPRHPRIRREELDITDSQRLQRLFEALPRLDVLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYSTFGSADRPAYSASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGLKADVEATRRIMQRTPLARWGEAPEVASAAAFLCGPGASFVTGAVLAVDGGYLCA

Atome Classification :

(29 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAI_E_5(2DTE)
?
[Raw transfer]




NAI_G_7(2DTE)
?
[Raw transfer]




NAD_B_4(4B79)
?
[Raw transfer]




NAD_A_3(4B79)
?
[Raw transfer]




NAP_A_3(3UF0)
?
[Raw transfer]




NAP_A_3(3UF0)
?
[Raw transfer]




NAD_A_5(2CFC)
HCDR_XANP2
[Raw transfer]




NAD_B_7(2CFC)
HCDR_XANP2
[Raw transfer]




NAP_B_4(3UF0)
?
[Raw transfer]




NAD_C_9(2CFC)
HCDR_XANP2
[Raw transfer]




NAP_A_3(4HP8)
?
[Raw transfer]




NAP_B_5(4HP8)
?
[Raw transfer]




NAP_A_3(3O03)
?
[Raw transfer]




GCO_A_4(3O03)
?
[Raw transfer]




EDO_A_7(4I08)
FABG_VIBCH
[Raw transfer]




2 PsiBlast_PDB 94.85100%-107 - C1 -4AVY - ? -
1 PsiBlast_PDB 92.88100%-105 - C1 -4B79 11.3 ?
21 PsiBlast_CBE 91.10100%-109 - C1 -4B79 11.2 ?
112 HHSearch 67.4529% -98 - C1 -3TZQ - ? -
83 PsiBlast_CBE 65.3531% -95 - C1 -4NBU - ? -
80 PsiBlast_CBE 64.7931% -95 - C1 -4NBU - ? -
117 HHSearch 64.3943% -96 - C1 -2D1Y - ? -
82 PsiBlast_CBE 63.5531% -95 - C1 -4NBU - ? -
44 PsiBlast_CBE 63.3234%-101 - C1 -4NBT - ? -
119 HHSearch 63.2741% -90 - C1 -3UF0 5.3 ?
28 PsiBlast_CBE 63.1940% -91 - C1 -3UF0 7.6 ?
81 PsiBlast_CBE 62.6831% -95 - C1 -4NBU - ? -
9 PsiBlast_PDB 62.6240% -89 - C1 -3UF0 9.2 ?
69 PsiBlast_CBE 62.3134%-102 - C1 -2AE2 - TRN2_DATST -
19 PsiBlast_PDB 62.0138%-101 - C1 -4DML - ? -
43 PsiBlast_CBE 61.9134%-102 - C1 -4NBT - ? -
58 PsiBlast_CBE 61.2534%-109 - C1 -4WK6 - ? -
59 PsiBlast_CBE 61.0834%-109 - C1 -4WK6 - ? -
68 PsiBlast_CBE 61.0434%-101 - C1 -2AE2 - TRN2_DATST -
6 PsiBlast_PDB 60.8334%-100 - C1 -2PNF - FABG_AQUAE -
18 PsiBlast_PDB 59.3436%-101 - C1 -3O03 8.3 ?
86 PsiBlast_CBE 57.4136%-109 - C1 -2DTE 10.8 ?
87 PsiBlast_CBE 57.3636%-109 - C1 -2DTE 11.3 ?
75 PsiBlast_CBE 56.9634% -98 - C1 -4I08 3.0 FABG_VIBCH
3 PsiBlast_PDB 54.5439% -82 - C1 -4HP8 10.9 ?
22 PsiBlast_CBE 53.3239% -84 - C1 -4HP8 6.3 ?
51 PsiBlast_CBE 48.6137% -87 - C1 -2CFC 8.5 HCDR_XANP2
50 PsiBlast_CBE 48.1637% -86 - C1 -2CFC 8.9 HCDR_XANP2
49 PsiBlast_CBE 47.6637% -84 - C1 -2CFC 6.8 HCDR_XANP2