@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4117: (2016-02-23 )
MTSITPVTLANCEDEPIHVPGAIQPHGALVTLRADGMVLAASENIQALLGFVASPGSYLTQEQVGPEVLRMLEEGLTGNGPWSNSVETRIGEHLFDVIGHSYKEVFYLEFEIRTADTLSITSFTLNAQRIIAQVQLHNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARRLYIQNPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVGGKLWGLFSCHHMSPKLIPYPVRMSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGGRTLSIRGDFERQAGNVLQRLQRDPERDIYHTDNWPQPSEDSPDGGDCCGVLAIRFHRQESGWIFWFRHEEVHRIRWGGKPEKLLTIGPSGPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDLMELCLNHAAEVDRMRQRLIAVLGHDLRNPLQSISMAAALLSSSDTRTTELRQHISASSSRMERLVSQILDMSRLQSGIGLTVNPVDTDVSQLVRQIVCETDVAYPGLVIEIAIDPQVRAVVDPDRYAQVAANLLSNARHHGLPGRPVLVTLTRQGDEVCLSVLNETSGLSEAQLANLFEPFKRESADNQRNRNGLGIGLYISQAIAQAHQGRIDVDCRDDVITFCLRLPVRQAETGSSS

Atome Classification :

(43 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

LBV_A_2(4Q0J)
BPHY_DEIRA
[Raw transfer]



BLA_C_2(3NOT)
BPHY_PSEAE
[Raw transfer]



BLA_C_2(3NOP)
BPHY_PSEAE
[Raw transfer]



CYC_A_2(3ZQ5)
PHY1_SYNY3
[Raw transfer]



LBV_A_2(2O9C)
BPHY_DEIRA
[Raw transfer]



LBV_A_2(4IJG)
BPHY_DEIRA
[Raw transfer]



CYC_A_2(2VEA)
PHY1_SYNY3
[Raw transfer]



LBV_A_2(2O9B)
BPHY_DEIRA
[Raw transfer]



LBV_A_4(4Q0I)
BPHY_DEIRA
[Raw transfer]



LBV_A_3(4O0P)
BPHY_DEIRA
[Raw transfer]



LBV_B_4(2OOL)
?
[Raw transfer]



LBV_A_2(4CQH)
BPHY_DEIRA
[Raw transfer]



LBV_A_3(4E04)
?
[Raw transfer]



LBV_B_4(4O0P)
BPHY_DEIRA
[Raw transfer]



LBV_A_3(2OOL)
?
[Raw transfer]



LBV_A_3(2OOL)
?
[Raw transfer]



LBV_B_4(4E04)
?
[Raw transfer]



BLA_C_2(3NOU)
BPHY_PSEAE
[Raw transfer]



BLA_B_4(4R70)
?
[Raw transfer]



LBV_A_2(4Y5F)
BPHY_DEIRA
[Raw transfer]



LBV_A_2(4Y3I)
BPHY_DEIRA
[Raw transfer]



BLA_A_3(4R6L)
?
[Raw transfer]



BLA_A_3(4S21)
?
[Raw transfer]



BLA_A_3(4R70)
?
[Raw transfer]



BLA_A_2(1ZTU)
BPHY_DEIRA
[Raw transfer]



LBV_A_2(4O8G)
BPHY_DEIRA
[Raw transfer]
2 PsiBlast_PDB 97.3699%-123 - C4 -3NHQ - BPHY_PSEAE -
25 PsiBlast_CBE 96.9899%-124 - C4 -3NHQ - BPHY_PSEAE -
21 PsiBlast_CBE 96.5599%-123 - C4 -3NHQ - BPHY_PSEAE -
24 PsiBlast_CBE 96.4899%-124 - C4 -3NHQ - BPHY_PSEAE -
46 HHSearch 96.3499%-120 - C4 -3NHQ - BPHY_PSEAE -
32 PsiBlast_CBE 96.3299%-124 - C4 -3C2W - BPHY_PSEAE -
22 PsiBlast_CBE 95.8699%-119 - C4 -3NHQ - BPHY_PSEAE -
26 PsiBlast_CBE 95.5799%-117 - C4 -3NHQ - BPHY_PSEAE -
70 Fugue 95.47100%-124 - C4 -3C2W - BPHY_PSEAE -
1 PsiBlast_PDB 95.2799%-124 - C4 -3C2W - BPHY_PSEAE -
3 PsiBlast_PDB 94.9999%-117 - C4 -3NOP 11.2 BPHY_PSEAE
4 PsiBlast_PDB 94.9199%-117 - C4 -3NOT 9.0 BPHY_PSEAE
5 PsiBlast_PDB 94.7899%-117 - C4 -3NOU 8.2 BPHY_PSEAE
31 PsiBlast_CBE 94.7399%-129 - C4 -3C2W - BPHY_PSEAE -
33 PsiBlast_CBE 94.6999%-120 - C4 -3C2W - BPHY_PSEAE -
29 PsiBlast_CBE 94.4899%-122 - C4 -3C2W - BPHY_PSEAE -
28 PsiBlast_CBE 94.3199%-121 - C4 -3C2W - BPHY_PSEAE -
23 PsiBlast_CBE 93.7099%-117 - C4 -3NHQ - BPHY_PSEAE -
27 PsiBlast_CBE 93.6099%-120 - C4 -3NHQ - BPHY_PSEAE -
30 PsiBlast_CBE 91.3099%-116 - C4 -3C2W - BPHY_PSEAE -
34 PsiBlast_CBE 66.2835% -88 - C4 -4R70 11.2 ?
6 PsiBlast_PDB 66.0735% -87 - C4 -4R70 11.8 ?
10 PsiBlast_PDB 65.5332% -92 - C4 -3ZQ5 11.0 PHY1_SYNY3
9 PsiBlast_PDB 65.2932% -93 - C4 -2VEA 9.3 PHY1_SYNY3
15 PsiBlast_PDB 64.3033% -86 - C4 -4Q0J 11.0 BPHY_DEIRA
8 PsiBlast_PDB 62.6833% -94 - C4 -4S21 11.7 ?
7 PsiBlast_PDB 62.5333% -96 - C4 -4R6L 11.3 ?
14 PsiBlast_PDB 60.7133% -86 - C4 -4O0P 10.2 BPHY_DEIRA
36 PsiBlast_CBE 58.8233% -86 - C4 -4O0P 10.7 BPHY_DEIRA
39 PsiBlast_CBE 57.3938% -93 - C4 -2OOL 11.0 ?
16 PsiBlast_PDB 55.7838% -94 - C4 -2OOL 11.3 ?
47 HHSearch 55.0538% -91 - C4 -2OOL 11.3 ?
18 PsiBlast_PDB 52.7039% -88 - C4 -2O9B 10.9 BPHY_DEIRA
42 PsiBlast_CBE 52.3538% -93 - C4 -4O8G 9.9 BPHY_DEIRA
19 PsiBlast_PDB 51.9739% -88 - C4 -2O9C 11.1 BPHY_DEIRA
20 PsiBlast_PDB 51.5739% -88 - C4 -4Y3I 10.8 BPHY_DEIRA
43 PsiBlast_CBE 51.4537% -89 - C4 -4CQH 10.5 BPHY_DEIRA
40 PsiBlast_CBE 51.1739% -87 - C4 -4Y5F 10.5 BPHY_DEIRA
17 PsiBlast_PDB 50.6639% -93 - C4 -4IJG 10.6 BPHY_DEIRA
11 PsiBlast_PDB 50.5440% -81 - C4 -4E04 11.6 ?
41 PsiBlast_CBE 50.2239% -90 - C4 -4Q0I 10.7 BPHY_DEIRA
35 PsiBlast_CBE 49.8840% -79 - C4 -4E04 11.4 ?
73 Fugue 47.7738% -84 * C4 *1ZTU 7.3 BPHY_DEIRA