@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4137: (2016-02-24 )
MITACPRPCAWRSYALGLGLLPLAAQAEFLADSSAHLDLRNFYQLRDYRQHDAPQSQAGNWSQGFVLRLQSGFTGGPLGFGLDATGLLGVKLDSGRGRSNDGTLPFGANSKEPVDDYSHLGLTAKLRYSQTQLQVGILMPQLPVAFRDDVRLLPQTFDGALLTSSEIEGLTLTAGQLWKSRTRESAGSDDMYIMGRDKAHASDEFNLAGATYAFTPRLSASYYYGQLKDIYRQHYLGLLHTLPLGEGLSLRSDLRYFDSGEDGAAISGPVDNRNLNAMLTLRAGAHAFGIGVQKMIGNDAFPVLNGYTTPYVANLMAYQTFTRPQEKSWQLRYDYDFAGLGLPGLNLMTRYVQGRDIDRGAGRADDSEWERNTDLSYVIQSGPLKSVALKWRNITYRSRYGADLDENRFIVNYTLKLW

Atome Classification :

(31 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

C8E_A_3(2Y0K)
?
[Raw transfer]



C8E_B_24(2Y2X)
?
[Raw transfer]



C8E_B_24(3SYS)
?
[Raw transfer]



C8E_B_9(4FMS)
?
[Raw transfer]



C8E_A_9(2Y0K)
?
[Raw transfer]



C8E_A_13(2QTK)
?
[Raw transfer]



C8E_A_8(2QTK)
?
[Raw transfer]



C8E_A_7(3SYS)
?
[Raw transfer]



C8E_A_7(2Y2X)
?
[Raw transfer]



C8E_A_7(2Y2X)
?
[Raw transfer]



C8E_B_3(2QTK)
?
[Raw transfer]



C8E_A_9(2Y0H)
?
[Raw transfer]



C8E_B_5(3SZD)
?
[Raw transfer]



C8E_B_9(4FRX)
?
[Raw transfer]



C8E_A_13(3T24)
?
[Raw transfer]



C8E_A_6(4FSP)
?
[Raw transfer]



C8E_A_7(3SY7)
PORD_PSEAE
[Raw transfer]



C8E_A_5(4FT6)
?
[Raw transfer]



C8E_B_5(3SZD)
?
[Raw transfer]



C8E_B_9(4FMS)
?
[Raw transfer]
2 PsiBlast_PDB 98.42100% -49 - C9 -3T0S - ? -
1 PsiBlast_PDB 98.42100% -49 - C9 -2Y0H - ? -
36 HHSearch 97.8699% -45 - C9 -2Y0H 2.9 ?
11 PsiBlast_PDB 84.5441% -27 - C9 -3JTY - ? -
14 PsiBlast_PDB 84.4441% -32 - C9 -4FRX - ? -
5 PsiBlast_PDB 83.9251% -32 - C9 -3T24 - ? -
22 PsiBlast_CBE 83.7151% -36 - C9 -3T24 - ? -
26 PsiBlast_CBE 82.9941% -30 - C9 -4FRX 2.5 ?
40 HHSearch 82.9549% -35 - C9 -3T24 2.7 ?
39 HHSearch 82.8851% -41 - C9 -2Y0L - ? -
10 PsiBlast_PDB 82.7045% -29 - C9 -4FT6 2.4 ?
6 PsiBlast_PDB 82.5050% -28 - C9 -4FRT - ? -
4 PsiBlast_PDB 82.4852% -36 - C9 -3T20 - ? -
9 PsiBlast_PDB 82.2746% -42 - C9 -4FSP 2.5 ?
15 PsiBlast_PDB 82.0540% -35 - C9 -3SYS 2.0 ?
3 PsiBlast_PDB 82.0451% -37 - C9 -2Y0L - ? -
28 PsiBlast_CBE 81.9140% -32 - C9 -2Y2X 3.6 ?
7 PsiBlast_PDB 81.8649% -35 - C9 -3SZV - ? -
35 HHSearch 81.5848% -37 - C9 -3SZV - ? -
21 PsiBlast_CBE 81.3851% -34 - C9 -3T24 - ? -
27 PsiBlast_CBE 81.2240% -34 - C9 -3SYS 3.6 ?
33 HHSearch 81.1141% -35 - C9 -2Y2X 2.0 ?
17 PsiBlast_PDB 81.0440% -36 - C9 -2Y2X 2.0 ?
8 PsiBlast_PDB 80.4249% -31 - C9 -2Y0K 3.0 ?
29 PsiBlast_CBE 79.3040% -35 - C9 -2QTK 2.1 ?
12 PsiBlast_PDB 79.2244% -38 - C9 -4FMS 4.0 ?
16 PsiBlast_PDB 78.4040% -31 - C9 -2QTK 2.7 ?
13 PsiBlast_PDB 78.2944% -38 - C9 -3SZD 2.3 ?
25 PsiBlast_CBE 78.1644% -40 - C9 -3SZD 2.4 ?
38 HHSearch 77.5336% -30 - C9 -3SY7 2.3 PORD_PSEAE
24 PsiBlast_CBE 77.1044% -39 - C9 -4FMS 1.8 ?