@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4143: (2016-02-24 )
MAFLDALALRLGRRLPLVLQTEATECGLACLAMIAGYHGHHTGLMELRRRFSVSLKGISLKQLIQTAHRLGLGTRAVKLDLGDLGKLKLPCVLHWNFNHFVVLKAVDGRGAVLHDPAHGQRRLGLEEVSRSFTGVALELWPESGFEKQEAPPRIKLLGMLGKVTGLYRSLAQVLLLAGALEVFSLISPFFLQWTIDNVIVSEDRDLLSTLAIGFGLLLLMQQAVSGVRAWVMMHMSTLLGVQWQANVFSHLLRLPAQYFEKRHLGDVVSRFGAVNSIQQTLTAAFLSAVLDGLMTVATLGMMLLYSPPLAAIAIAAMSLYALGRWIWYRPLRNATEEQIVHAARQQSHFLETVRGIRPLKLFQRQDERRSVWLGLLVEQINAGLRTQKLQLFYQQLNGLLFGVENLLVIWLGATMVMDGQFSVGILMAFNAYKSQFDSRVGSLIDKFFELRMLQLQGERLADIVLQAPEVSHGDILPENLREREASIEIQGLRYRYAEQEPWVLDGLDLRIAGGESVAIVGPSGCGKSTLFNVLLGILPPVEGQIRMAGLDLAQLGLDGLRELVGTVLQDDVLFAGSLSDNISFFDPQPDMPWLLQCAQMAAIHDDIQAMPMGYNTLVGDMGTVLSGGQKQRVMLARALYKKPRILFLDEATSHLDVHCEQRVNAAIRALRITRIMVAHRPETIASADRVIVLGQGKVSLDESTARLAERQAAAAREQA

Atome Classification :

(72 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_8(2ONJ)
Y1866_STAAM
[Raw transfer]




ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_C_11(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ATP_H_8(2FGJ)

[Raw transfer]




ATP_D_5(3VX4)
?
[Raw transfer]




ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_D_19(3SI7)

[Raw transfer]




ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]




AGS_A_3(4S0F)
?
[Raw transfer]




ATP_B_10(1R0Z)
CFTR_MOUSE
[Raw transfer]




ANP_D_12(1Q3H)

[Raw transfer]




ATP_D_12(1XEF)

[Raw transfer]




ATP_D_12(1R0X)

[Raw transfer]




ATP_A_3(3VX4)
?
[Raw transfer]




ADP_A_5(2HYD)
Y1866_STAAM
[Raw transfer]




ATP_B_10(1R0X)
CFTR_MOUSE
[Raw transfer]




ANP_A_9(1Q3H)
CFTR_MOUSE
[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




ATP_A_9(1R0X)
CFTR_MOUSE
[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ATP_B_10(3SI7)
CFTR_MOUSE
[Raw transfer]




ATP_A_3(3VX4)
?
[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ADP_A_2(3NHB)

[Raw transfer]




ADP_A_3(3NHA)

[Raw transfer]




ANP_C_11(1Q3H)
CFTR_MOUSE
[Raw transfer]




ADP_B_2(2FFA)

[Raw transfer]




ATP_C_11(1R0X)
CFTR_MOUSE
[Raw transfer]




ATP_C_9(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_A_5(3SI7)
CFTR_MOUSE
[Raw transfer]




12D_A_2(3B5J)

[Raw transfer]




ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ADP_B_2(2FFB)

[Raw transfer]




ANP_B_10(1Q3H)
CFTR_MOUSE
[Raw transfer]




ATP_C_14(3SI7)
CFTR_MOUSE
[Raw transfer]




ATP_D_12(1R0Z)

[Raw transfer]




ADP_H_8(1R0Y)

[Raw transfer]




ATP_A_2(3NH9)

[Raw transfer]




ATP_D_15(1XF9)

[Raw transfer]




ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_A_5(1R10)
CFTR_MOUSE
[Raw transfer]




ATP_C_11(1R0Z)
CFTR_MOUSE
[Raw transfer]




ATP_A_9(1R0Z)
CFTR_MOUSE
[Raw transfer]




ADP_E_5(1R0Y)
CFTR_MOUSE
[Raw transfer]




ATP_B_6(1R10)

[Raw transfer]




ADP_F_6(1R0Y)
CFTR_MOUSE
[Raw transfer]




ADP_G_7(1R0Y)
CFTR_MOUSE
[Raw transfer]




ADP_D_10(1MV5)

[Raw transfer]




ADP_B_8(1MV5)
LMRA_LACLA
[Raw transfer]




1 PsiBlast_PDB 92.6429%-116 - C2 -4RY2 - ? -
6 PsiBlast_PDB 80.4627%-119 - C1 -3QF4 - Y288_THEMA -
7 PsiBlast_PDB 79.3027%-122 - C1 -4Q4A - Y288_THEMA -
9 PsiBlast_PDB 79.1727%-119 - C1 -4Q4J - Y288_THEMA -
8 PsiBlast_PDB 79.1427%-116 - C1 -4Q4H - Y288_THEMA -
112 HHSearch 79.0528%-113 - C1 -3ZDQ - ABCBA_HUMAN -
4 PsiBlast_PDB 75.1727%-110 - C1 -2ONJ 6.0 Y1866_STAAM
3 PsiBlast_PDB 74.9127%-110 - C1 -2HYD 4.6 Y1866_STAAM
14 PsiBlast_PDB 74.0025%-115 - C1 -4MYC - ATM1_YEAST -
15 PsiBlast_PDB 73.5225%-114 - C1 -4MYH - ATM1_YEAST -
2 PsiBlast_PDB 72.7929%-107 - C1 -4S0F 3.0 ?
113 HHSearch 72.5925%-106 - C1 -3WMG - ? -
110 HHSearch 72.3822%-108 - C1 -3B60 - MSBA_SALTY -
102 Fugue 72.0521%-105 - C1 -3B60 - MSBA_SALTY -
109 Fugue 70.4524% -99 - C1 -4F4C - PGP1_CAEEL -
11 PsiBlast_PDB 69.5327%-103 - C1 -4AYX - ABCBA_HUMAN -
13 PsiBlast_PDB 68.1627%-102 - C1 -4AYW - ABCBA_HUMAN -
12 PsiBlast_PDB 67.6527%-100 - C1 -3ZDQ - ABCBA_HUMAN -
10 PsiBlast_PDB 66.8427%-102 - C1 -4AYT - ABCBA_HUMAN -
5 PsiBlast_PDB 62.4527%-109 - C1 -4A82 - Y1866_STAAM -
38 PsiBlast_CBE 59.6741%-112 - C1 -1XEF 6.4 HLYBP_ECOLX
36 PsiBlast_CBE 59.3041%-113 - C1 -1XEF 7.0 HLYBP_ECOLX
37 PsiBlast_CBE 59.0341%-111 - C1 -1XEF 7.1 HLYBP_ECOLX
21 PsiBlast_CBE 58.8342%-120 - C1 -2PMK 6.7
120 HHSearch 58.7140%-108 - C1 -2FF7 6.2
22 PsiBlast_CBE 58.5942%-114 - C1 -2FF7 6.3
33 PsiBlast_CBE 58.2741%-108 - C1 -2FGJ 6.9 HLYBP_ECOLX
27 PsiBlast_CBE 58.2541%-113 - C1 -2FGK 7.3 HLYBP_ECOLX
35 PsiBlast_CBE 58.1141%-110 - C1 -1XEF 6.9
28 PsiBlast_CBE 58.0541%-108 - C1 -2FGK 7.3 HLYBP_ECOLX
25 PsiBlast_CBE 57.9141%-114 - C1 -2FGK 7.1
26 PsiBlast_CBE 57.6441%-108 - C1 -2FGK 6.7 HLYBP_ECOLX
30 PsiBlast_CBE 57.5541%-111 - C1 -2FGJ 6.7
29 PsiBlast_CBE 57.4241%-114 - C1 -2FFB 6.0
24 PsiBlast_CBE 57.1641%-118 - C1 -3B5J 6.6
34 PsiBlast_CBE 56.9041%-114 - C1 -2FFA 6.2
31 PsiBlast_CBE 56.8241%-107 - C1 -2FGJ 6.8 HLYBP_ECOLX
32 PsiBlast_CBE 56.5041%-104 - C1 -2FGJ 7.1 HLYBP_ECOLX
45 PsiBlast_CBE 55.9538%-102 - C1 -3NH9 5.9
117 HHSearch 55.9132%-102 * C1 *3VX4 6.8 ?
124 HHSearch 54.1731%-102 - C1 -1MV5 4.7 LMRA_LACLA
43 PsiBlast_CBE 54.0238%-104 - C1 -3NHB 5.3
44 PsiBlast_CBE 53.5138%-102 - C1 -3NHA 4.6
53 PsiBlast_CBE 53.2233% -95 - C1 -3VX4 5.0 ?
54 PsiBlast_CBE 51.9633% -96 - C1 -3VX4 6.3 ?
84 PsiBlast_CBE 45.4731% -95 - C1 -1R0X 4.0
56 PsiBlast_CBE 45.4635% -90 - C1 -1MV5 3.5 LMRA_LACLA
58 PsiBlast_CBE 44.2735% -87 - C1 -1MV5 4.1 LMRA_LACLA
85 PsiBlast_CBE 43.9931% -93 - C1 -1R0X 4.5 CFTR_MOUSE
81 PsiBlast_CBE 43.9531% -91 - C1 -1R0Y 3.6 CFTR_MOUSE
86 PsiBlast_CBE 43.9431% -92 - C1 -1R0X 4.3 CFTR_MOUSE
80 PsiBlast_CBE 43.8931% -97 - C1 -1R0Y 3.4
97 PsiBlast_CBE 43.8831% -94 - C1 -3SI7 4.4 CFTR_MOUSE
82 PsiBlast_CBE 43.6631% -91 - C1 -1R0Y 3.3 CFTR_MOUSE
92 PsiBlast_CBE 43.3031% -94 - C1 -1Q3H 3.9
95 PsiBlast_CBE 43.2931% -92 - C1 -1Q3H 4.3 CFTR_MOUSE
96 PsiBlast_CBE 43.1431% -93 - C1 -3SI7 5.0
99 PsiBlast_CBE 43.1231% -95 - C1 -3SI7 4.0 CFTR_MOUSE
93 PsiBlast_CBE 43.0031% -94 - C1 -1Q3H 4.6 CFTR_MOUSE
98 PsiBlast_CBE 42.8731% -92 - C1 -3SI7 3.5 CFTR_MOUSE
75 PsiBlast_CBE 42.8731% -91 - C1 -1R0Z 4.1 CFTR_MOUSE
83 PsiBlast_CBE 42.5331% -92 - C1 -1R0Y 3.4 CFTR_MOUSE
87 PsiBlast_CBE 42.4631% -93 - C1 -1R0X 4.3 CFTR_MOUSE
77 PsiBlast_CBE 42.4631% -90 - C1 -1R0Z 4.1 CFTR_MOUSE
74 PsiBlast_CBE 42.2831% -92 - C1 -1R0Z 3.8
78 PsiBlast_CBE 42.0031% -93 - C1 -1R10 3.7
76 PsiBlast_CBE 41.7631% -89 - C1 -1R0Z 3.5 CFTR_MOUSE
79 PsiBlast_CBE 41.5231% -92 - C1 -1R10 3.1 CFTR_MOUSE
94 PsiBlast_CBE 41.4831% -90 - C1 -1Q3H 4.3 CFTR_MOUSE
100 PsiBlast_CBE 41.3831% -94 - C1 -1XF9 3.7
57 PsiBlast_CBE 39.7835% -75 - C1 -1MV5 3.6 LMRA_LACLA
55 PsiBlast_CBE 38.7935% -80 - C1 -1MV5 2.8