@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4210: (2016-02-24 )
MNGQRYRETPLDIERLRRLNRATVERYMAMKGAERLQRHSLFVEDGCAGNWTTESGEPLVFRGHESLRRLAEWLERCFPDWEWHNVRIFETEDPNHFWVECDGRGKALVPGYPQGYCENHYIHSFELENGRIKRNREFMNPIQKLRALGIAVPQIKRDGIPT

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AOD_A_3(3JUM)
?
[Raw transfer]



AOD_B_4(3JUM)
?
[Raw transfer]



AKD_B_4(3JUP)
?
[Raw transfer]



3B4_B_5(3B4P)
?
[Raw transfer]



GOL_A_6(3FF0)
PHZB2_PSEAE
[Raw transfer]



3B4_A_3(3B4P)
?
[Raw transfer]



AKD_A_3(3JUP)
?
[Raw transfer]



GOL_A_7(3FF0)
PHZB2_PSEAE
[Raw transfer]



GOL_A_7(3FF0)
PHZB2_PSEAE
[Raw transfer]



AKD_B_6(3JUQ)
?
[Raw transfer]



AOD_A_3(3JUM)
?
[Raw transfer]



HHA_B_7(3CNM)
?
[Raw transfer]



HHA_A_6(3CNM)
?
[Raw transfer]



AJD_A_3(3JUQ)
?
[Raw transfer]



AJD_A_3(3JUO)
?
[Raw transfer]



3OC_A_3(3DZL)
?
[Raw transfer]



3OC_A_4(3DZL)
?
[Raw transfer]



3OC_B_6(3DZL)
?
[Raw transfer]



AKD_B_6(3JUN)
?
[Raw transfer]



AKD_A_4(3JUN)
?
[Raw transfer]
1 PsiBlast_PDB 95.1464% -77 - C2 -3FF0 3.6 PHZB2_PSEAE
29 HHSearch 94.9763% -77 - C2 -3FF0 3.6 PHZB2_PSEAE
18 PsiBlast_CBE 91.8555% -76 - C2 -3JUP 3.6 ?
23 PsiBlast_CBE 91.5755% -77 - C2 -3CNM 3.7 ?
21 PsiBlast_CBE 91.4555% -76 * C2 *3JUM 4.7 ?
5 PsiBlast_PDB 91.1655% -75 - C2 -3DZL 3.7 ?
24 PsiBlast_CBE 90.9755% -76 - C2 -3B4P 5.0 ?
7 PsiBlast_PDB 90.6455% -78 - C2 -3JUM 5.1 ?
4 PsiBlast_PDB 90.4855% -77 - C2 -3CNM 3.9 ?
22 PsiBlast_CBE 90.3355% -76 - C2 -3DZL 2.3 ?
2 PsiBlast_PDB 90.2155% -77 - C2 -3B4O - ? -
25 PsiBlast_CBE 90.1655% -73 - C2 -3B4O - ? -
9 PsiBlast_PDB 89.9655% -76 - C2 -3JUO 4.2 ?
19 PsiBlast_CBE 89.9155% -75 - C2 -3JUO - ? -
10 PsiBlast_PDB 89.7755% -76 - C2 -3JUP 4.0 ?
11 PsiBlast_PDB 89.4555% -76 - C2 -3JUQ 3.0 ?
3 PsiBlast_PDB 88.9255% -78 - C2 -3B4P 5.1 ?
17 PsiBlast_CBE 88.7655% -75 - C2 -3JUQ 4.3 ?
8 PsiBlast_PDB 87.3755% -75 - C2 -3JUN 3.1 ?
30 HHSearch 87.2852% -79 - C2 -3JUM 4.1 ?
20 PsiBlast_CBE 86.9955% -73 - C2 -3JUN 3.0 ?