@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4216: (2016-02-24 )
MGVNANISESLTGTIEAPFPEFEAPPANPMEVLRNWLERARRYGVREPRALALATVDGQGRPSTRIVVIAELGERGVVFATHADSQKGRELAQNPWASGVLYWRESSQQIILNGRAERLPDERADAQWLSRPYQTHPMSIASRQSETLADIHALRAEARRLAETDGPLPRPPGYCLFELCLESVEFWGNGTERLHERLRYDRDEGGWKHRYLQP

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

EDO_B_10(1VL7)
?
[Raw transfer]



FMN_G_7(1T9M)
?
[Raw transfer]



FMN_G_7(1TY9)
PHZG_PSEFL
[Raw transfer]



FMN_H_8(1T9M)
?
[Raw transfer]



PLP_A_4(1JNW)
PDXH_ECOLI
[Raw transfer]



FMN_H_8(1TY9)
PHZG_PSEFL
[Raw transfer]



FMN_B_7(4HMU)
PHZG_PSEFL
[Raw transfer]



FMN_B_8(4HMT)
PHZG_PSEFL
[Raw transfer]



FMN_B_6(4HMV)
PHZG_PSEFL
[Raw transfer]



FMN_B_5(4HMX)
?
[Raw transfer]



FMN_B_4(4HMW)
?
[Raw transfer]



FMN_B_8(4HMS)
PHZG_PSEFL
[Raw transfer]
20 PsiBlast_CBE 94.18100% -84 - C1 -1T9M 2.9 ?
1 PsiBlast_PDB 93.32100% -84 - C1 -1T9M 3.1 ?
25 PsiBlast_CBE 86.2071% -85 - C1 -4HMS 3.6 PHZG_PSEFL
23 PsiBlast_CBE 86.0971% -81 - C1 -4HMU 8.3 PHZG_PSEFL
24 PsiBlast_CBE 85.9371% -82 - C1 -4HMT 8.5 PHZG_PSEFL
21 PsiBlast_CBE 85.8671% -82 * C1 *1TY9 3.4 PHZG_PSEFL
2 PsiBlast_PDB 85.2871% -86 - C1 -1TY9 2.9 PHZG_PSEFL
22 PsiBlast_CBE 85.2271% -81 - C1 -4HMV 8.2 PHZG_PSEFL
27 PsiBlast_CBE 75.5446% -76 - C1 -4HMW 8.0 ?
26 PsiBlast_CBE 75.0346% -73 - C1 -4HMX 8.2 ?
4 PsiBlast_PDB 73.3832% -85 - C1 -1G79 - PDXH_ECOLI -
6 PsiBlast_PDB 72.5332% -85 - C1 -1DNL - PDXH_ECOLI -
9 PsiBlast_PDB 72.5132% -86 - C1 -1JNW 2.6 PDXH_ECOLI
33 HHSearch 72.5032% -83 - C1 -1DNL - PDXH_ECOLI -
7 PsiBlast_PDB 72.3032% -82 - C1 -1G77 - PDXH_ECOLI -
8 PsiBlast_PDB 72.0732% -85 - C1 -1G78 - PDXH_ECOLI -
3 PsiBlast_PDB 71.0232% -81 - C1 -1G76 - PDXH_ECOLI -
31 HHSearch 70.9732% -81 - C1 -1NRG - PNPO_HUMAN -
50 Fugue 69.7432% -83 - C1 -1DNL - PDXH_ECOLI -
32 HHSearch 69.2133% -82 - C1 -2A2J - PDXH_MYCTU -